Analysis of interatomic Contacts of Structural Units in PDB entry:
5AQ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AQ9 entry

There are 2 chains in PDB entry 5AQ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4TRP 422
B
 GLU 18ASP 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 5AQ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
26 36Right-handed alpha
Helix 3
3
A
49 58Right-handed alpha
Helix 4
4
A
59 69Right-handed alpha
Helix 5
5
A
82 90Right-handed alpha
Helix 6
6
A
92 102Right-handed alpha
Helix 7
7
A
115 124Right-handed alpha
Helix 8
8
A
125 135Right-handed alpha
Helix 9
9
A
148 156Right-handed alpha
Helix 10
10
A
158 175Right-handed alpha
Helix 11
11
A
205 220Right-handed alpha
Helix 12
12
A
232 236Right-handed 310
Helix 13
13
A
242 246Right-handed 310
Helix 14
14
A
253 263Right-handed alpha
Helix 15
15
A
265 276Right-handed alpha
Helix 16
16
A
277 289Right-handed alpha
Helix 17
17
A
301 305Right-handed 310
Helix 18
18
A
316 329Right-handed alpha
Helix 19
19
A
334 347Right-handed alpha
Helix 20
20
A
354 359Right-handed 310
Helix 21
21
A
403 421Right-handed alpha
Helix 22
22
B
31 47Right-handed alpha
Helix 23
23
B
57 66Right-handed alpha
Helix 24
24
B
79 88Right-handed alpha
Helix 25
25
B
97 102Right-handed alpha
Helix 26
26
B
106 111Right-handed alpha
Helix 27
27
B
146 156Right-handed alpha
Helix 28
28
B
168 177Right-handed alpha
Helix 29
29
B
200 216Right-handed alpha
Helix 30
30
B
224 234Right-handed alpha
Helix 31
31
B
243 245Right-handed 310
Helix 32
32
B
246 254Right-handed alpha
Helix 33
33
B
287 298Right-handed alpha
Helix 34
34
B
301 312Right-handed alpha
Helix 35
35
B
319 327Right-handed alpha
Helix 36
36
B
329 342Right-handed alpha
Helix 37
37
B
350 367Right-handed alpha
Helix 38
38
B
371 383Right-handed alpha
Helix 39
39
C
12 25Right-handed alpha
Helix 40
40
C
26 36Right-handed alpha
Helix 41
41
C
49 58Right-handed alpha
Helix 42
42
C
59 69Right-handed alpha
Helix 43
43
C
82 90Right-handed alpha
Helix 44
44
C
92 102Right-handed alpha
Helix 45
45
C
115 124Right-handed alpha
Helix 46
46
C
125 135Right-handed alpha
Helix 47
47
C
148 156Right-handed alpha
Helix 48
48
C
158 175Right-handed alpha
Helix 49
49
C
205 220Right-handed alpha
Helix 50
50
C
232 236Right-handed 310
Helix 51
51
C
242 246Right-handed 310
Helix 52
52
C
253 263Right-handed alpha
Helix 53
53
C
265 276Right-handed alpha
Helix 54
54
C
277 289Right-handed alpha
Helix 55
55
C
301 305Right-handed 310
Helix 56
56
C
316 329Right-handed alpha
Helix 57
57
C
334 347Right-handed alpha
Helix 58
58
C
354 359Right-handed 310
Helix 59
59
C
403 421Right-handed alpha
Helix 60
60
D
31 47Right-handed alpha
Helix 61
61
D
57 67Right-handed alpha
Helix 62
62
D
81 88Right-handed alpha
Helix 63
63
D
97 102Right-handed alpha
Helix 64
64
D
105 112Right-handed alpha
Helix 65
65
D
146 156Right-handed alpha
Helix 66
66
D
168 179Right-handed alpha
Helix 67
67
D
200 216Right-handed alpha
Helix 68
68
D
224 234Right-handed alpha
Helix 69
69
D
243 245Right-handed 310
Helix 70
70
D
246 254Right-handed alpha
Helix 71
71
D
287 298Right-handed alpha
Helix 72
72
D
301 312Right-handed alpha
Helix 73
73
D
319 327Right-handed alpha
Helix 74
74
D
329 342Right-handed alpha
Helix 75
75
D
350 367Right-handed alpha
Helix 76
76
D
371 383Right-handed alpha
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There are 20 sheets in PDB entry 5AQ9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, A, DB, C, DD, DE, DF, G,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
391 398anti-parallel
Strand 4
A
376 384anti-parallel
Strand 5
A
364 372anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
314 315anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
251 252anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
22 25parallel
Strand 3
B
74 78parallel
Strand 4
B
273 281anti-parallel
Strand 5
B
343 344parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
22 25parallel
Strand 3
B
74 78parallel
Strand 4
B
273 281anti-parallel
Strand 5
B
121 126anti-parallel
Strand 6
B
316 317anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 344first strand
Strand 2
B
273 281parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
117 118anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
237 242parallel
Strand 3
B
129 133anti-parallel
Strand 4
B
257 260anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 187first strand
Strand 2
B
190 197anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 265first strand
Strand 2
B
268 269anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 194first strand
Strand 2
C
177 184anti-parallel
Strand 3
C
391 398anti-parallel
Strand 4
C
376 384anti-parallel
Strand 5
C
364 372anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
200 201first strand
Strand 2
C
314 315anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 229first strand
Strand 2
C
251 252anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
22 25parallel
Strand 3
D
74 78parallel
Strand 4
D
273 281anti-parallel
Strand 5
D
343 344parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
22 25parallel
Strand 3
D
74 78parallel
Strand 4
D
273 281anti-parallel
Strand 5
D
121 126anti-parallel
Strand 6
D
316 317anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
343 344first strand
Strand 2
D
273 281parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 114first strand
Strand 2
D
117 118anti-parallel
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There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
239 242first strand
Strand 2
D
129 133anti-parallel
Strand 3
D
257 260anti-parallel
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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
182 187first strand
Strand 2
D
190 197anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
264 265first strand
Strand 2
D
268 269anti-parallel
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