Analysis of interatomic Contacts of Structural Units in PDB entry:
5AQA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AQA entry

There are 2 chains in PDB entry 5AQA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 7TRP 418
B
 SER 12ALA 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5AQA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
26 36Right-handed alpha
Helix 3
3
A
49 58Right-handed alpha
Helix 4
4
A
59 69Right-handed alpha
Helix 5
5
A
82 91Right-handed alpha
Helix 6
6
A
92 102Right-handed alpha
Helix 7
7
A
115 123Right-handed alpha
Helix 8
8
A
125 135Right-handed alpha
Helix 9
9
A
148 156Right-handed alpha
Helix 10
10
A
158 171Right-handed alpha
Helix 11
11
A
199 201Right-handed 310
Helix 12
12
A
202 216Right-handed alpha
Helix 13
13
A
238 242Right-handed 310
Helix 14
14
A
249 259Right-handed alpha
Helix 15
15
A
261 271Right-handed alpha
Helix 16
16
A
273 285Right-handed alpha
Helix 17
17
A
297 302Right-handed 310
Helix 18
18
A
312 326Right-handed alpha
Helix 19
19
A
330 343Right-handed alpha
Helix 20
20
A
350 355Right-handed 310
Helix 21
21
A
399 416Right-handed alpha
Helix 22
22
B
16 24Right-handed alpha
Helix 23
23
B
26 35Right-handed alpha
Helix 24
24
B
49 58Right-handed alpha
Helix 25
25
B
59 69Right-handed alpha
Helix 26
26
B
82 91Right-handed alpha
Helix 27
27
B
92 102Right-handed alpha
Helix 28
28
B
115 123Right-handed alpha
Helix 29
29
B
125 135Right-handed alpha
Helix 30
30
B
148 156Right-handed alpha
Helix 31
31
B
158 171Right-handed alpha
Helix 32
32
B
199 201Right-handed 310
Helix 33
33
B
202 216Right-handed alpha
Helix 34
34
B
249 259Right-handed alpha
Helix 35
35
B
261 271Right-handed alpha
Helix 36
36
B
273 285Right-handed alpha
Helix 37
37
B
297 302Right-handed 310
Helix 38
38
B
312 326Right-handed alpha
Helix 39
39
B
330 343Right-handed alpha
Helix 40
40
B
350 355Right-handed 310
Helix 41
41
B
399 416Right-handed alpha
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There are 6 sheets in PDB entry 5AQA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
173 180anti-parallel
Strand 3
A
387 394anti-parallel
Strand 4
A
372 380anti-parallel
Strand 5
A
360 368anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
310 311anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
247 248anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 190first strand
Strand 2
B
173 180anti-parallel
Strand 3
B
387 394anti-parallel
Strand 4
B
372 380anti-parallel
Strand 5
B
360 368anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 197first strand
Strand 2
B
310 311anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
247 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il