Analysis of interatomic Contacts of Structural Units in PDB entry:
5AQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AQB entry

There are 3 chains in PDB entry 5AQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 18TRP 428
B
 SER 1PHE 64
B
 VAL 68SER 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5AQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
26 34Right-handed alpha
Helix 3
3
A
49 55Right-handed alpha
Helix 4
4
A
58 68Right-handed alpha
Helix 5
5
A
81 90Right-handed alpha
Helix 6
6
A
91 101Right-handed alpha
Helix 7
7
A
114 123Right-handed alpha
Helix 8
8
A
124 134Right-handed alpha
Helix 9
9
A
147 155Right-handed alpha
Helix 10
10
A
157 181Right-handed alpha
Helix 11
11
A
211 226Right-handed alpha
Helix 12
12
A
238 242Right-handed 310
Helix 13
13
A
248 252Right-handed 310
Helix 14
14
A
259 269Right-handed alpha
Helix 15
15
A
271 282Right-handed alpha
Helix 16
16
A
283 295Right-handed alpha
Helix 17
17
A
307 311Right-handed 310
Helix 18
18
A
322 336Right-handed alpha
Helix 19
19
A
340 353Right-handed alpha
Helix 20
20
A
360 365Right-handed 310
Helix 21
21
A
409 427Right-handed alpha
Helix 22
22
B
3 9Right-handed 310
Helix 23
23
B
37 39Right-handed 310
Helix 24
24
B
56 61Right-handed 310
Helix 25
25
B
68 72Right-handed 310
Helix 26
26
B
75 81Right-handed 310
Helix 27
27
B
82 87Right-handed alpha
Helix 28
28
B
156 159Right-handed 310
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There are 4 sheets in PDB entry 5AQB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
183 190anti-parallel
Strand 3
A
397 404anti-parallel
Strand 4
A
383 390anti-parallel
Strand 5
A
370 377anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
320 321anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
257 258anti-parallel
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There are 12 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
41 48anti-parallel
Strand 4
B
217 227anti-parallel
Strand 5
B
199 208anti-parallel
Strand 6
B
148 155anti-parallel
Strand 7
B
160 170anti-parallel
Strand 8
B
176 187anti-parallel
Strand 9
B
92 100anti-parallel
Strand 10
B
105 115anti-parallel
Strand 11
B
118 128anti-parallel
Strand 12
B
12 22parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il