Analysis of interatomic Contacts of Structural Units in PDB entry:
5AQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AQD entry

There are 36 chains in PDB entry 5AQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 164
B
 MET 1SER 164
C
 MET 1SER 164
D
 MET 1SER 164
E
 MET 1SER 164
F
 MET 1SER 164
G
 MET 1SER 164
H
 MET 1SER 164
I
 MET 1SER 164
J
 MET 1SER 164
K
 MET 1SER 164
L
 MET 1SER 164
M
 MET 1GLY 69
M
 CYS 71SER 184
N
 MET 1GLY 69
N
 CYS 71SER 184
O
 MET 1GLY 69
O
 CYS 71SER 184
P
 MET 1GLY 69
P
 CYS 71SER 184
Q
 MET 1GLY 69
Q
 CYS 71SER 184
R
 MET 1GLY 69
R
 CYS 71SER 184
S
 MET 1GLY 69
S
 CYS 71SER 184
T
 MET 1GLY 69
T
 CYS 71SER 184
U
 MET 1GLY 69
U
 CYS 71SER 184
V
 MET 1GLY 69
V
 CYS 71SER 184
W
 MET 1GLY 69
W
 CYS 71SER 184
X
 MET 1GLY 69
X
 CYS 71SER 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are239 helices in PDB entry 5AQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
20 63Right-handed alpha
Helix 3
3
A
64 68Right-handed 310
Helix 4
4
A
75 100Right-handed alpha
Helix 5
5
A
102 109Right-handed alpha
Helix 6
6
A
112 120Right-handed alpha
Helix 7
7
A
124 138Right-handed alpha
Helix 8
8
A
145 163Right-handed alpha
Helix 9
9
B
3 15Right-handed alpha
Helix 10
10
B
20 63Right-handed alpha
Helix 11
11
B
64 68Right-handed 310
Helix 12
12
B
75 100Right-handed alpha
Helix 13
13
B
102 109Right-handed alpha
Helix 14
14
B
112 120Right-handed alpha
Helix 15
15
B
124 138Right-handed alpha
Helix 16
16
B
145 163Right-handed alpha
Helix 17
17
C
3 15Right-handed alpha
Helix 18
18
C
20 63Right-handed alpha
Helix 19
19
C
64 68Right-handed 310
Helix 20
20
C
75 100Right-handed alpha
Helix 21
21
C
102 109Right-handed alpha
Helix 22
22
C
112 120Right-handed alpha
Helix 23
23
C
124 138Right-handed alpha
Helix 24
24
C
145 162Right-handed alpha
Helix 25
25
D
3 15Right-handed alpha
Helix 26
26
D
20 63Right-handed alpha
Helix 27
27
D
64 68Right-handed 310
Helix 28
28
D
75 100Right-handed alpha
Helix 29
29
D
102 109Right-handed alpha
Helix 30
30
D
112 120Right-handed alpha
Helix 31
31
D
124 138Right-handed alpha
Helix 32
32
D
145 163Right-handed alpha
Helix 33
33
E
3 15Right-handed alpha
Helix 34
34
E
20 63Right-handed alpha
Helix 35
35
E
64 68Right-handed 310
Helix 36
36
E
75 100Right-handed alpha
Helix 37
37
E
102 109Right-handed alpha
Helix 38
38
E
112 120Right-handed alpha
Helix 39
39
E
124 138Right-handed alpha
Helix 40
40
E
145 162Right-handed alpha
Helix 41
41
F
3 15Right-handed alpha
Helix 42
42
F
20 63Right-handed alpha
Helix 43
43
F
64 68Right-handed 310
Helix 44
44
F
75 100Right-handed alpha
Helix 45
45
F
102 109Right-handed alpha
Helix 46
46
F
112 120Right-handed alpha
Helix 47
47
F
124 138Right-handed alpha
Helix 48
48
F
145 163Right-handed alpha
Helix 49
49
G
3 15Right-handed alpha
Helix 50
50
G
20 63Right-handed alpha
Helix 51
51
G
64 68Right-handed 310
Helix 52
52
G
75 100Right-handed alpha
Helix 53
53
G
102 109Right-handed alpha
Helix 54
54
G
112 120Right-handed alpha
Helix 55
55
G
124 138Right-handed alpha
Helix 56
56
G
145 163Right-handed alpha
Helix 57
57
H
3 15Right-handed alpha
Helix 58
58
H
20 63Right-handed alpha
Helix 59
59
H
64 68Right-handed 310
Helix 60
60
H
75 100Right-handed alpha
Helix 61
61
H
102 109Right-handed alpha
Helix 62
62
H
112 121Right-handed alpha
Helix 63
63
H
124 138Right-handed alpha
Helix 64
64
H
145 163Right-handed alpha
Helix 65
65
I
3 15Right-handed alpha
Helix 66
66
I
20 63Right-handed alpha
Helix 67
67
I
64 68Right-handed 310
Helix 68
68
I
75 100Right-handed alpha
Helix 69
69
I
102 109Right-handed alpha
Helix 70
70
I
112 121Right-handed alpha
Helix 71
71
I
124 138Right-handed alpha
Helix 72
72
I
145 163Right-handed alpha
Helix 73
73
J
3 15Right-handed alpha
Helix 74
74
J
20 63Right-handed alpha
Helix 75
75
J
64 68Right-handed 310
Helix 76
76
J
75 100Right-handed alpha
Helix 77
77
J
102 109Right-handed alpha
Helix 78
78
J
112 120Right-handed alpha
Helix 79
79
J
124 138Right-handed alpha
Helix 80
80
J
145 163Right-handed alpha
Helix 81
81
K
3 15Right-handed alpha
Helix 82
82
K
20 63Right-handed alpha
Helix 83
83
K
64 68Right-handed 310
Helix 84
84
K
75 100Right-handed alpha
Helix 85
85
K
102 109Right-handed alpha
Helix 86
86
K
112 120Right-handed alpha
Helix 87
87
K
124 138Right-handed alpha
Helix 88
88
K
145 163Right-handed alpha
Helix 89
89
L
3 15Right-handed alpha
Helix 90
90
L
20 63Right-handed alpha
Helix 91
91
L
64 68Right-handed 310
Helix 92
92
L
75 100Right-handed alpha
Helix 93
93
L
102 109Right-handed alpha
Helix 94
94
L
112 120Right-handed alpha
Helix 95
95
L
124 138Right-handed alpha
Helix 96
96
L
145 163Right-handed alpha
Helix 97
97
M
3 14Right-handed alpha
Helix 98
98
M
22 31Right-handed alpha
Helix 99
99
M
31 44Right-handed alpha
Helix 100
100
M
45 60Right-handed alpha
Helix 101
101
M
61 66Right-handed 310
Helix 102
102
M
73 98Right-handed alpha
Helix 103
103
M
100 107Right-handed alpha
Helix 104
104
M
110 119Right-handed alpha
Helix 105
105
M
121 141Right-handed alpha
Helix 106
106
M
145 150Right-handed alpha
Helix 107
107
M
151 153Right-handed 310
Helix 108
108
M
165 184Right-handed alpha
Helix 109
109
N
3 14Right-handed alpha
Helix 110
110
N
22 31Right-handed alpha
Helix 111
111
N
31 44Right-handed alpha
Helix 112
112
N
45 60Right-handed alpha
Helix 113
113
N
61 66Right-handed 310
Helix 114
114
N
73 98Right-handed alpha
Helix 115
115
N
100 107Right-handed alpha
Helix 116
116
N
110 119Right-handed alpha
Helix 117
117
N
121 141Right-handed alpha
Helix 118
118
N
145 150Right-handed alpha
Helix 119
119
N
151 153Right-handed 310
Helix 120
120
N
165 184Right-handed alpha
Helix 121
121
O
3 14Right-handed alpha
Helix 122
122
O
22 31Right-handed alpha
Helix 123
123
O
31 45Right-handed alpha
Helix 124
124
O
45 60Right-handed alpha
Helix 125
125
O
61 66Right-handed 310
Helix 126
126
O
73 98Right-handed alpha
Helix 127
127
O
100 107Right-handed alpha
Helix 128
128
O
110 119Right-handed alpha
Helix 129
129
O
121 141Right-handed alpha
Helix 130
130
O
145 150Right-handed alpha
Helix 131
131
O
151 153Right-handed 310
Helix 132
132
O
165 184Right-handed alpha
Helix 133
133
P
3 14Right-handed alpha
Helix 134
134
P
22 31Right-handed alpha
Helix 135
135
P
31 45Right-handed alpha
Helix 136
136
P
45 61Right-handed alpha
Helix 137
137
P
62 66Right-handed 310
Helix 138
138
P
73 98Right-handed alpha
Helix 139
139
P
100 107Right-handed alpha
Helix 140
140
P
110 119Right-handed alpha
Helix 141
141
P
121 141Right-handed alpha
Helix 142
142
P
145 150Right-handed alpha
Helix 143
143
P
151 153Right-handed 310
Helix 144
144
P
165 184Right-handed alpha
Helix 145
145
Q
3 14Right-handed alpha
Helix 146
146
Q
22 31Right-handed alpha
Helix 147
147
Q
31 60Right-handed alpha
Helix 148
148
Q
61 66Right-handed 310
Helix 149
149
Q
73 98Right-handed alpha
Helix 150
150
Q
100 107Right-handed alpha
Helix 151
151
Q
110 119Right-handed alpha
Helix 152
152
Q
121 141Right-handed alpha
Helix 153
153
Q
145 150Right-handed alpha
Helix 154
154
Q
151 153Right-handed 310
Helix 155
155
Q
165 183Right-handed alpha
Helix 156
156
R
3 14Right-handed alpha
Helix 157
157
R
23 31Right-handed alpha
Helix 158
158
R
31 45Right-handed alpha
Helix 159
159
R
45 61Right-handed alpha
Helix 160
160
R
62 66Right-handed 310
Helix 161
161
R
73 98Right-handed alpha
Helix 162
162
R
100 107Right-handed alpha
Helix 163
163
R
110 119Right-handed alpha
Helix 164
164
R
121 142Right-handed alpha
Helix 165
165
R
145 150Right-handed alpha
Helix 166
166
R
151 153Right-handed 310
Helix 167
167
R
165 184Right-handed alpha
Helix 168
168
S
3 14Right-handed alpha
Helix 169
169
S
22 31Right-handed alpha
Helix 170
170
S
31 44Right-handed alpha
Helix 171
171
S
45 61Right-handed alpha
Helix 172
172
S
62 66Right-handed 310
Helix 173
173
S
73 98Right-handed alpha
Helix 174
174
S
100 107Right-handed alpha
Helix 175
175
S
110 119Right-handed alpha
Helix 176
176
S
121 142Right-handed alpha
Helix 177
177
S
145 150Right-handed alpha
Helix 178
178
S
151 153Right-handed 310
Helix 179
179
S
165 184Right-handed alpha
Helix 180
180
T
3 14Right-handed alpha
Helix 181
181
T
22 31Right-handed alpha
Helix 182
182
T
31 45Right-handed alpha
Helix 183
183
T
45 60Right-handed alpha
Helix 184
184
T
61 66Right-handed 310
Helix 185
185
T
73 98Right-handed alpha
Helix 186
186
T
100 107Right-handed alpha
Helix 187
187
T
110 119Right-handed alpha
Helix 188
188
T
121 141Right-handed alpha
Helix 189
189
T
145 150Right-handed alpha
Helix 190
190
T
151 153Right-handed 310
Helix 191
191
T
165 184Right-handed alpha
Helix 192
192
U
3 14Right-handed alpha
Helix 193
193
U
22 31Right-handed alpha
Helix 194
194
U
31 44Right-handed alpha
Helix 195
195
U
45 61Right-handed alpha
Helix 196
196
U
62 66Right-handed 310
Helix 197
197
U
73 98Right-handed alpha
Helix 198
198
U
100 107Right-handed alpha
Helix 199
199
U
110 119Right-handed alpha
Helix 200
200
U
121 142Right-handed alpha
Helix 201
201
U
145 150Right-handed alpha
Helix 202
202
U
151 153Right-handed 310
Helix 203
203
U
165 184Right-handed alpha
Helix 204
204
V
3 15Right-handed alpha
Helix 205
205
V
22 31Right-handed alpha
Helix 206
206
V
31 45Right-handed alpha
Helix 207
207
V
45 60Right-handed alpha
Helix 208
208
V
61 66Right-handed 310
Helix 209
209
V
73 98Right-handed alpha
Helix 210
210
V
100 107Right-handed alpha
Helix 211
211
V
110 119Right-handed alpha
Helix 212
212
V
121 141Right-handed alpha
Helix 213
213
V
145 150Right-handed alpha
Helix 214
214
V
151 153Right-handed 310
Helix 215
215
V
165 184Right-handed alpha
Helix 216
216
W
3 14Right-handed alpha
Helix 217
217
W
22 31Right-handed alpha
Helix 218
218
W
31 44Right-handed alpha
Helix 219
219
W
45 61Right-handed alpha
Helix 220
220
W
62 66Right-handed 310
Helix 221
221
W
73 98Right-handed alpha
Helix 222
222
W
100 107Right-handed alpha
Helix 223
223
W
110 119Right-handed alpha
Helix 224
224
W
121 142Right-handed alpha
Helix 225
225
W
145 150Right-handed alpha
Helix 226
226
W
151 153Right-handed 310
Helix 227
227
W
165 184Right-handed alpha
Helix 228
228
X
3 14Right-handed alpha
Helix 229
229
X
22 31Right-handed alpha
Helix 230
230
X
31 45Right-handed alpha
Helix 231
231
X
45 60Right-handed alpha
Helix 232
232
X
61 66Right-handed 310
Helix 233
233
X
73 98Right-handed alpha
Helix 234
234
X
100 107Right-handed alpha
Helix 235
235
X
110 119Right-handed alpha
Helix 236
236
X
121 141Right-handed alpha
Helix 237
237
X
145 150Right-handed alpha
Helix 238
238
X
151 153Right-handed 310
Helix 239
239
X
165 184Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5AQD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il