Analysis of interatomic Contacts of Structural Units in PDB entry:
5ARE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ARE entry

There are 22 chains in PDB entry 5ARE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	ALA 510
B	VAL 23	ALA 510
C	ASP 24	ALA 510
D	THR 9	GLU 475
E	THR 9	ALA 474
F	THR 9	ALA 474
G	ALA 1	ASP 273
H	GLN 15	LEU 145
I	VAL 1	VAL 47
J	ILE 2	PHE 73
K	ILE 2	PHE 73
L	ILE 2	PHE 73
M	ILE 2	PHE 73
N	ILE 2	PHE 73
O	ILE 2	PHE 73
P	ILE 2	PHE 73
Q	ILE 2	PHE 73
S	PHE 1	GLU 168
T	PRO 1	LYS 174
U	ARG 1	ILE 122
V	LEU 5	VAL 71
W	ILE 10	THR 226

There are200 helices in PDB entry 5ARE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	16	Right-handed alpha
Helix 2	2	A	150	157	Right-handed alpha
Helix 3	3	A	174	191	Right-handed alpha
Helix 4	4	A	209	223	Right-handed alpha
Helix 5	5	A	225	227	Right-handed 310
Helix 6	6	A	239	260	Right-handed alpha
Helix 7	7	A	270	285	Right-handed alpha
Helix 8	8	A	290	294	Right-handed 310
Helix 9	9	A	296	308	Right-handed alpha
Helix 10	10	A	313	317	Right-handed 310
Helix 11	11	A	336	346	Right-handed alpha
Helix 12	12	A	353	359	Right-handed alpha
Helix 13	13	A	374	379	Right-handed 310
Helix 14	14	A	380	402	Right-handed alpha
Helix 15	15	A	411	429	Right-handed alpha
Helix 16	16	A	437	450	Right-handed alpha
Helix 17	17	A	451	455	Right-handed 310
Helix 18	18	A	457	475	Right-handed alpha
Helix 19	19	A	476	487	Right-handed alpha
Helix 20	20	A	490	509	Right-handed alpha
Helix 21	21	B	150	157	Right-handed alpha
Helix 22	22	B	174	191	Right-handed alpha
Helix 23	23	B	209	223	Right-handed alpha
Helix 24	24	B	225	227	Right-handed 310
Helix 25	25	B	239	260	Right-handed alpha
Helix 26	26	B	270	285	Right-handed alpha
Helix 27	27	B	290	294	Right-handed 310
Helix 28	28	B	296	308	Right-handed alpha
Helix 29	29	B	313	317	Right-handed 310
Helix 30	30	B	336	346	Right-handed alpha
Helix 31	31	B	353	360	Right-handed alpha
Helix 32	32	B	380	400	Right-handed alpha
Helix 33	33	B	411	429	Right-handed alpha
Helix 34	34	B	437	450	Right-handed alpha
Helix 35	35	B	452	456	Right-handed 310
Helix 36	36	B	457	459	Right-handed 310
Helix 37	37	B	460	475	Right-handed alpha
Helix 38	38	B	476	487	Right-handed alpha
Helix 39	39	B	490	507	Right-handed alpha
Helix 40	40	C	150	157	Right-handed alpha
Helix 41	41	C	174	191	Right-handed alpha
Helix 42	42	C	193	198	Right-handed alpha
Helix 43	43	C	209	223	Right-handed alpha
Helix 44	44	C	225	227	Right-handed 310
Helix 45	45	C	239	260	Right-handed alpha
Helix 46	46	C	270	285	Right-handed alpha
Helix 47	47	C	290	294	Right-handed 310
Helix 48	48	C	297	308	Right-handed alpha
Helix 49	49	C	314	317	Right-handed 310
Helix 50	50	C	336	346	Right-handed alpha
Helix 51	51	C	353	360	Right-handed alpha
Helix 52	52	C	374	379	Right-handed 310
Helix 53	53	C	380	403	Right-handed alpha
Helix 54	54	C	411	429	Right-handed alpha
Helix 55	55	C	437	450	Right-handed alpha
Helix 56	56	C	457	459	Right-handed 310
Helix 57	57	C	460	475	Right-handed alpha
Helix 58	58	C	476	487	Right-handed alpha
Helix 59	59	C	490	509	Right-handed alpha
Helix 60	60	D	87	90	Right-handed 310
Helix 61	61	D	122	125	Right-handed 310
Helix 62	62	D	137	144	Right-handed alpha
Helix 63	63	D	161	177	Right-handed alpha
Helix 64	64	D	189	204	Right-handed alpha
Helix 65	65	D	225	246	Right-handed alpha
Helix 66	66	D	257	270	Right-handed alpha
Helix 67	67	D	277	281	Right-handed 310
Helix 68	68	D	284	294	Right-handed alpha
Helix 69	69	D	312	316	Right-handed 310
Helix 70	70	D	319	329	Right-handed alpha
Helix 71	71	D	336	342	Right-handed alpha
Helix 72	72	D	364	392	Right-handed alpha
Helix 73	73	D	399	415	Right-handed alpha
Helix 74	74	D	421	426	Right-handed alpha
Helix 75	75	D	433	447	Right-handed alpha
Helix 76	76	D	453	458	Right-handed 310
Helix 77	77	D	462	474	Right-handed alpha
Helix 78	78	E	87	90	Right-handed 310
Helix 79	79	E	122	126	Right-handed 310
Helix 80	80	E	137	144	Right-handed alpha
Helix 81	81	E	161	177	Right-handed alpha
Helix 82	82	E	189	204	Right-handed alpha
Helix 83	83	E	225	246	Right-handed alpha
Helix 84	84	E	257	272	Right-handed alpha
Helix 85	85	E	277	281	Right-handed 310
Helix 86	86	E	284	294	Right-handed alpha
Helix 87	87	E	312	316	Right-handed 310
Helix 88	88	E	319	328	Right-handed alpha
Helix 89	89	E	336	342	Right-handed alpha
Helix 90	90	E	349	353	Right-handed 310
Helix 91	91	E	364	392	Right-handed alpha
Helix 92	92	E	397	415	Right-handed alpha
Helix 93	93	E	421	426	Right-handed alpha
Helix 94	94	E	433	447	Right-handed alpha
Helix 95	95	E	448	451	Right-handed 310
Helix 96	96	E	462	473	Right-handed alpha
Helix 97	97	F	87	90	Right-handed 310
Helix 98	98	F	137	144	Right-handed alpha
Helix 99	99	F	161	174	Right-handed alpha
Helix 100	100	F	189	204	Right-handed alpha
Helix 101	101	F	225	246	Right-handed alpha
Helix 102	102	F	257	270	Right-handed alpha
Helix 103	103	F	271	273	Right-handed 310
Helix 104	104	F	277	281	Right-handed 310
Helix 105	105	F	284	294	Right-handed alpha
Helix 106	106	F	313	316	Right-handed 310
Helix 107	107	F	319	326	Right-handed alpha
Helix 108	108	F	327	329	Right-handed 310
Helix 109	109	F	336	341	Right-handed alpha
Helix 110	110	F	360	363	Right-handed 310
Helix 111	111	F	364	384	Right-handed alpha
Helix 112	112	F	384	392	Right-handed alpha
Helix 113	113	F	397	415	Right-handed alpha
Helix 114	114	F	421	426	Right-handed alpha
Helix 115	115	F	433	447	Right-handed alpha
Helix 116	116	F	453	458	Right-handed 310
Helix 117	117	F	462	472	Right-handed alpha
Helix 118	118	G	2	50	Right-handed alpha
Helix 119	119	G	80	91	Right-handed alpha
Helix 120	120	G	137	151	Right-handed alpha
Helix 121	121	G	188	194	Right-handed 310
Helix 122	122	G	197	269	Right-handed alpha
Helix 123	123	H	99	103	Right-handed 310
Helix 124	124	H	104	120	Right-handed alpha
Helix 125	125	H	124	144	Right-handed alpha
Helix 126	126	I	10	25	Right-handed alpha
Helix 127	127	I	27	37	Right-handed alpha
Helix 128	128	J	12	17	Right-handed 310
Helix 129	129	J	18	36	Right-handed alpha
Helix 130	130	J	41	47	Right-handed alpha
Helix 131	131	J	50	71	Right-handed alpha
Helix 132	132	K	4	14	Right-handed alpha
Helix 133	133	K	15	19	Right-handed 310
Helix 134	134	K	20	29	Right-handed alpha
Helix 135	135	K	29	34	Right-handed alpha
Helix 136	136	K	41	47	Right-handed alpha
Helix 137	137	K	49	54	Right-handed alpha
Helix 138	138	K	58	70	Right-handed alpha
Helix 139	139	L	13	20	Right-handed 310
Helix 140	140	L	22	35	Right-handed alpha
Helix 141	141	L	41	46	Right-handed alpha
Helix 142	142	L	47	52	Right-handed alpha
Helix 143	143	L	58	70	Right-handed alpha
Helix 144	144	M	7	12	Right-handed alpha
Helix 145	145	M	14	17	Right-handed 310
Helix 146	146	M	18	29	Right-handed alpha
Helix 147	147	M	45	71	Right-handed alpha
Helix 148	148	N	15	17	Right-handed 310
Helix 149	149	N	18	34	Right-handed alpha
Helix 150	150	N	41	45	Right-handed alpha
Helix 151	151	N	46	54	Right-handed alpha
Helix 152	152	N	60	69	Right-handed alpha
Helix 153	153	O	13	17	Right-handed 310
Helix 154	154	O	18	24	Right-handed alpha
Helix 155	155	O	24	29	Right-handed alpha
Helix 156	156	O	29	34	Right-handed alpha
Helix 157	157	O	45	55	Right-handed alpha
Helix 158	158	O	58	63	Right-handed alpha
Helix 159	159	P	5	14	Right-handed alpha
Helix 160	160	P	17	29	Right-handed alpha
Helix 161	161	P	30	36	Right-handed alpha
Helix 162	162	P	41	47	Right-handed alpha
Helix 163	163	P	49	56	Right-handed alpha
Helix 164	164	P	57	65	Right-handed alpha
Helix 165	165	Q	14	18	Right-handed 310
Helix 166	166	Q	22	32	Right-handed alpha
Helix 167	167	Q	52	57	Right-handed alpha
Helix 168	168	Q	64	69	Right-handed alpha
Helix 169	169	S	15	28	Right-handed alpha
Helix 170	170	S	31	48	Right-handed alpha
Helix 171	171	S	82	92	Right-handed alpha
Helix 172	172	S	93	96	Right-handed 310
Helix 173	173	S	97	108	Right-handed alpha
Helix 174	174	S	110	114	Right-handed 310
Helix 175	175	S	134	140	Right-handed alpha
Helix 176	176	S	161	167	Right-handed alpha
Helix 177	177	T	1	18	Right-handed alpha
Helix 178	178	T	22	148	Right-handed alpha
Helix 179	179	T	150	155	Right-handed 310
Helix 180	180	T	156	171	Right-handed alpha
Helix 181	181	U	9	14	Right-handed alpha
Helix 182	182	U	18	20	Right-handed 310
Helix 183	183	U	21	42	Right-handed alpha
Helix 184	184	U	50	58	Right-handed alpha
Helix 185	185	U	62	74	Right-handed alpha
Helix 186	186	U	85	98	Right-handed alpha
Helix 187	187	U	98	121	Right-handed alpha
Helix 188	188	V	8	24	Right-handed alpha
Helix 189	189	V	33	51	Right-handed alpha
Helix 190	190	W	10	34	Right-handed alpha
Helix 191	191	W	39	57	Right-handed alpha
Helix 192	192	W	58	60	Right-handed 310
Helix 193	193	W	65	88	Right-handed alpha
Helix 194	194	W	95	104	Right-handed alpha
Helix 195	195	W	104	116	Right-handed alpha
Helix 196	196	W	120	123	Right-handed 310
Helix 197	197	W	124	129	Right-handed alpha
Helix 198	198	W	138	150	Right-handed alpha
Helix 199	199	W	150	182	Right-handed alpha
Helix 200	200	W	188	226	Right-handed alpha

There are 20 sheets in PDB entry 5ARE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, DD, EA, EB, EC, FA, FB, GA, HA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	35	first strand
Strand 2	A	87	90	anti-parallel
Strand 3	A	51	55	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	A	70	75	anti-parallel
Strand 6	A	38	43	anti-parallel
Strand 7	A	28	35	first strand

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	125	128	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	229	234	parallel
Strand 4	A	200	206	parallel
Strand 5	A	263	269	parallel
Strand 6	A	320	328	parallel
Strand 7	A	166	169	parallel
Strand 8	A	349	351	parallel

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There are 19 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	34	first strand
Strand 2	B	87	94	parallel
Strand 3	B	51	55	parallel
Strand 4	B	60	66	parallel
Strand 5	F	10	17	anti-parallel
Strand 6	F	20	25	anti-parallel
Strand 7	F	57	62	parallel
Strand 8	F	46	54	anti-parallel
Strand 9	C	28	35	anti-parallel
Strand 10	C	87	94	anti-parallel
Strand 11	C	51	55	anti-parallel
Strand 12	C	58	66	anti-parallel
Strand 13	C	71	75	anti-parallel
Strand 14	C	38	43	parallel
Strand 15	B	38	43	first strand
Strand 16	B	71	76	first strand
Strand 17	F	35	38	first strand
Strand 18	F	74	80	anti-parallel
Strand 19	F	10	17	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	229	233	parallel
Strand 3	B	199	205	parallel
Strand 4	B	263	269	parallel
Strand 5	B	320	329	parallel
Strand 6	B	166	170	parallel
Strand 7	B	349	352	parallel
Strand 8	B	365	371	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	106	109	anti-parallel
Strand 3	C	229	233	parallel
Strand 4	C	200	205	parallel
Strand 5	C	263	269	parallel
Strand 6	C	320	328	parallel
Strand 7	C	166	169	parallel
Strand 8	C	349	351	parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	311	312	anti-parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	17	first strand
Strand 2	D	74	80	anti-parallel
Strand 3	D	20	25	first strand
Strand 4	D	35	38	first strand
Strand 5	D	45	54	first strand
Strand 6	D	57	62	first strand
Strand 7	D	10	17	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	113	115	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	215	220	parallel
Strand 3	D	180	186	parallel
Strand 4	D	250	256	parallel
Strand 5	D	302	310	parallel
Strand 6	D	151	155	parallel
Strand 7	D	298	299	anti-parallel
Strand 8	D	302	310	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	335	first strand
Strand 2	D	348	355	anti-parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	17	first strand
Strand 2	E	74	80	anti-parallel
Strand 3	E	20	25	first strand
Strand 4	E	35	39	first strand
Strand 5	E	46	54	first strand
Strand 6	E	57	62	first strand
Strand 7	E	10	17	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	86	first strand
Strand 2	E	112	115	anti-parallel

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There are 10 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	215	220	parallel
Strand 3	E	180	186	parallel
Strand 4	E	250	256	parallel
Strand 5	E	303	309	parallel
Strand 6	E	297	298	anti-parallel
Strand 7	E	354	355	first strand
Strand 8	E	331	333	anti-parallel
Strand 9	E	151	154	parallel
Strand 10	E	303	309	parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	86	first strand
Strand 2	F	112	115	anti-parallel

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There are 10 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	96	first strand
Strand 2	F	215	220	parallel
Strand 3	F	180	186	parallel
Strand 4	F	250	256	parallel
Strand 5	F	302	311	parallel
Strand 6	F	298	299	anti-parallel
Strand 7	F	354	355	first strand
Strand 8	F	331	334	anti-parallel
Strand 9	F	151	156	parallel
Strand 10	F	302	311	parallel

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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	177	first strand
Strand 2	G	159	167	anti-parallel
Strand 3	G	69	71	parallel
Strand 4	G	107	108	parallel
Strand 5	G	127	129	parallel
Strand 6	I	43	44	anti-parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	47	first strand
Strand 2	H	26	40	anti-parallel
Strand 3	H	97	98	first strand
Strand 4	H	74	77	parallel
Strand 5	H	61	67	parallel
Strand 6	H	26	40	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ARE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ARE