Analysis of interatomic Contacts of Structural Units in PDB entry:
5ARJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ARJ entry

There are 4 chains in PDB entry 5ARJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LYS 119
B
 GLN 1LYS 119
C
 LYS -1LYS 119
D
 LYS -1LYS 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5ARJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 13Right-handed alpha
Helix 2
2
A
21 32Right-handed alpha
Helix 3
3
A
49 55Right-handed alpha
Helix 4
4
A
56 59Right-handed 310
Helix 5
5
B
2 13Right-handed alpha
Helix 6
6
B
21 32Right-handed alpha
Helix 7
7
B
49 55Right-handed alpha
Helix 8
8
B
56 59Right-handed 310
Helix 9
9
C
-1 13Right-handed alpha
Helix 10
10
C
21 32Right-handed alpha
Helix 11
11
C
49 55Right-handed alpha
Helix 12
12
C
56 59Right-handed 310
Helix 13
13
D
-1 13Right-handed alpha
Helix 14
14
D
21 32Right-handed alpha
Helix 15
15
D
49 55Right-handed alpha
Helix 16
16
D
56 59Right-handed 310
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There are 4 sheets in PDB entry 5ARJ. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
71 83anti-parallel
Strand 3
A
94 108anti-parallel
Strand 4
A
113 117anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
71 83anti-parallel
Strand 3
B
94 108anti-parallel
Strand 4
B
113 119anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 46first strand
Strand 2
C
71 83anti-parallel
Strand 3
C
94 108anti-parallel
Strand 4
C
113 119anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 46first strand
Strand 2
D
71 83anti-parallel
Strand 3
D
94 108anti-parallel
Strand 4
D
113 119anti-parallel
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