Analysis of interatomic Contacts of Structural Units in PDB entry:
5AUN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AUN entry

There are 2 chains in PDB entry 5AUN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 136
B
 MET 1LEU 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5AUN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 21Right-handed alpha
Helix 2
AA2
A
36 38Right-handed 310
Helix 3
AA3
A
40 53Right-handed alpha
Helix 4
AA4
A
83 89Right-handed 310
Helix 5
AA5
A
90 100Right-handed alpha
Helix 6
AA6
A
103 108Right-handed alpha
Helix 7
AA7
B
9 15Right-handed alpha
Helix 8
AA8
B
32 47Right-handed alpha
Helix 9
AA9
B
62 68Right-handed alpha
Helix 10
AB1
B
95 98Right-handed 310
Helix 11
AB2
B
106 121Right-handed alpha
Helix 12
AB3
B
138 148Right-handed alpha
Helix 13
AB4
B
160 177Right-handed alpha
Helix 14
AB5
B
200 208Right-handed alpha
Helix 15
AB6
B
221 225Right-handed 310
Helix 16
AB7
B
228 233Right-handed alpha
Helix 17
AB8
B
235 246Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5AUN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 67first strand
Strand 2
A
25 34parallel
Strand 3
A
126 134anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
70 73anti-parallel
Strand 3
A
118 122anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
89 93anti-parallel
Strand 3
B
51 55parallel
Strand 4
B
126 132parallel
Strand 5
B
18 25parallel
Strand 6
B
152 157parallel
Strand 7
B
180 189parallel
Strand 8
B
212 217parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il