Analysis of interatomic Contacts of Structural Units in PDB entry:
5AUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AUP entry

There are 4 chains in PDB entry 5AUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 136
B
 MET 1LEU 248
H
 MET 1LYS 135
I
 MET 1LEU 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 5AUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 21Right-handed alpha
Helix 2
AA2
A
40 53Right-handed alpha
Helix 3
AA3
A
83 89Right-handed 310
Helix 4
AA4
A
90 100Right-handed alpha
Helix 5
AA5
A
101 107Right-handed 310
Helix 6
AA6
B
7 9Right-handed 310
Helix 7
AA7
B
10 15Right-handed alpha
Helix 8
AA8
B
32 47Right-handed alpha
Helix 9
AA9
B
62 67Right-handed alpha
Helix 10
AB1
B
106 121Right-handed alpha
Helix 11
AB2
B
138 148Right-handed alpha
Helix 12
AB3
B
160 178Right-handed alpha
Helix 13
AB4
B
200 209Right-handed alpha
Helix 14
AB5
B
228 235Right-handed alpha
Helix 15
AB6
B
235 248Right-handed alpha
Helix 16
AB7
H
2 19Right-handed alpha
Helix 17
AB8
H
40 53Right-handed alpha
Helix 18
AB9
H
85 89Right-handed 310
Helix 19
AC1
H
90 100Right-handed alpha
Helix 20
AC2
H
103 108Right-handed alpha
Helix 21
AC3
I
7 9Right-handed 310
Helix 22
AC4
I
10 15Right-handed alpha
Helix 23
AC5
I
32 47Right-handed alpha
Helix 24
AC6
I
62 68Right-handed alpha
Helix 25
AC7
I
106 121Right-handed alpha
Helix 26
AC8
I
138 148Right-handed alpha
Helix 27
AC9
I
160 178Right-handed alpha
Helix 28
AD1
I
200 209Right-handed alpha
Helix 29
AD2
I
221 225Right-handed 310
Helix 30
AD3
I
228 235Right-handed alpha
Helix 31
AD4
I
235 247Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5AUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 67first strand
Strand 2
A
25 34parallel
Strand 3
A
126 134anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
70 73anti-parallel
Strand 3
A
118 122anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
51 55parallel
Strand 3
B
126 132parallel
Strand 4
B
18 25parallel
Strand 5
B
153 157parallel
Strand 6
B
181 189parallel
Strand 7
B
212 217parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
61 67first strand
Strand 2
H
25 34parallel
Strand 3
H
126 134anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
79 81first strand
Strand 2
H
70 73anti-parallel
Strand 3
H
118 122anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
89 92first strand
Strand 2
I
51 55parallel
Strand 3
I
126 132parallel
Strand 4
I
18 25parallel
Strand 5
I
153 157parallel
Strand 6
I
181 189parallel
Strand 7
I
212 217parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il