Analysis of interatomic Contacts of Structural Units in PDB entry:
5AUQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AUQ entry

There are 8 chains in PDB entry 5AUQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 4	LEU 248
B	ASP 5	LEU 248
C	ASP 5	LEU 248
D	ASP 5	LEU 248
E	ARG 7	LEU 248
F	ARG 7	LEU 248
G	ASP 5	LEU 248
H	ASP 5	LEU 248

There are 91 helices in PDB entry 5AUQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	15	Right-handed alpha
Helix 2	AA2	A	32	47	Right-handed alpha
Helix 3	AA3	A	62	68	Right-handed alpha
Helix 4	AA4	A	95	97	Right-handed 310
Helix 5	AA5	A	106	121	Right-handed alpha
Helix 6	AA6	A	138	145	Right-handed alpha
Helix 7	AA7	A	146	148	Right-handed 310
Helix 8	AA8	A	160	162	Right-handed 310
Helix 9	AA9	A	163	177	Right-handed alpha
Helix 10	AB1	A	200	208	Right-handed alpha
Helix 11	AB2	A	221	226	Right-handed 310
Helix 12	AB3	A	228	233	Right-handed alpha
Helix 13	AB4	A	235	246	Right-handed alpha
Helix 14	AB5	B	7	15	Right-handed alpha
Helix 15	AB6	B	32	47	Right-handed alpha
Helix 16	AB7	B	62	67	Right-handed alpha
Helix 17	AB8	B	95	97	Right-handed 310
Helix 18	AB9	B	106	121	Right-handed alpha
Helix 19	AC1	B	138	146	Right-handed alpha
Helix 20	AC2	B	163	177	Right-handed alpha
Helix 21	AC3	B	200	208	Right-handed alpha
Helix 22	AC4	B	221	226	Right-handed 310
Helix 23	AC5	B	228	233	Right-handed alpha
Helix 24	AC6	B	235	248	Right-handed alpha
Helix 25	AC7	C	6	15	Right-handed alpha
Helix 26	AC8	C	32	47	Right-handed alpha
Helix 27	AC9	C	62	68	Right-handed alpha
Helix 28	AD1	C	95	98	Right-handed 310
Helix 29	AD2	C	106	121	Right-handed alpha
Helix 30	AD3	C	138	146	Right-handed alpha
Helix 31	AD4	C	160	162	Right-handed 310
Helix 32	AD5	C	163	177	Right-handed alpha
Helix 33	AD6	C	201	208	Right-handed alpha
Helix 34	AD7	C	219	226	Right-handed 310
Helix 35	AD8	C	228	233	Right-handed alpha
Helix 36	AD9	C	235	247	Right-handed alpha
Helix 37	AE1	D	6	15	Right-handed alpha
Helix 38	AE2	D	32	47	Right-handed alpha
Helix 39	AE3	D	62	68	Right-handed alpha
Helix 40	AE4	D	95	97	Right-handed 310
Helix 41	AE5	D	106	121	Right-handed alpha
Helix 42	AE6	D	138	146	Right-handed alpha
Helix 43	AE7	D	163	177	Right-handed alpha
Helix 44	AE8	D	200	208	Right-handed alpha
Helix 45	AE9	D	221	226	Right-handed alpha
Helix 46	AF1	D	228	234	Right-handed alpha
Helix 47	AF2	D	235	247	Right-handed alpha
Helix 48	AF3	E	8	15	Right-handed alpha
Helix 49	AF4	E	32	47	Right-handed alpha
Helix 50	AF5	E	62	68	Right-handed alpha
Helix 51	AF6	E	95	97	Right-handed 310
Helix 52	AF7	E	106	121	Right-handed alpha
Helix 53	AF8	E	138	146	Right-handed alpha
Helix 54	AF9	E	163	177	Right-handed alpha
Helix 55	AG1	E	201	208	Right-handed alpha
Helix 56	AG2	E	221	226	Right-handed 310
Helix 57	AG3	E	228	233	Right-handed alpha
Helix 58	AG4	E	235	248	Right-handed alpha
Helix 59	AG5	F	8	15	Right-handed alpha
Helix 60	AG6	F	32	47	Right-handed alpha
Helix 61	AG7	F	62	68	Right-handed alpha
Helix 62	AG8	F	95	97	Right-handed 310
Helix 63	AG9	F	106	121	Right-handed alpha
Helix 64	AH1	F	138	145	Right-handed alpha
Helix 65	AH2	F	146	148	Right-handed 310
Helix 66	AH3	F	163	177	Right-handed alpha
Helix 67	AH4	F	200	208	Right-handed alpha
Helix 68	AH5	F	222	226	Right-handed 310
Helix 69	AH6	F	228	233	Right-handed alpha
Helix 70	AH7	F	235	246	Right-handed alpha
Helix 71	AH8	G	6	15	Right-handed alpha
Helix 72	AH9	G	32	47	Right-handed alpha
Helix 73	AI1	G	62	67	Right-handed alpha
Helix 74	AI2	G	95	98	Right-handed 310
Helix 75	AI3	G	106	121	Right-handed alpha
Helix 76	AI4	G	138	146	Right-handed alpha
Helix 77	AI5	G	163	177	Right-handed alpha
Helix 78	AI6	G	200	208	Right-handed alpha
Helix 79	AI7	G	228	233	Right-handed alpha
Helix 80	AI8	G	235	247	Right-handed alpha
Helix 81	AI9	H	6	15	Right-handed alpha
Helix 82	AJ1	H	32	47	Right-handed alpha
Helix 83	AJ2	H	62	67	Right-handed alpha
Helix 84	AJ3	H	95	97	Right-handed 310
Helix 85	AJ4	H	106	121	Right-handed alpha
Helix 86	AJ5	H	138	146	Right-handed alpha
Helix 87	AJ6	H	163	177	Right-handed alpha
Helix 88	AJ7	H	199	208	Right-handed alpha
Helix 89	AJ8	H	221	226	Right-handed 310
Helix 90	AJ9	H	228	233	Right-handed alpha
Helix 91	AK1	H	235	246	Right-handed alpha

There are 8 sheets in PDB entry 5AUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	89	93	anti-parallel
Strand 3	A	51	55	parallel
Strand 4	A	126	132	parallel
Strand 5	A	18	25	parallel
Strand 6	A	152	157	parallel
Strand 7	A	180	189	parallel
Strand 8	A	212	217	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	51	55	parallel
Strand 3	B	126	132	parallel
Strand 4	B	18	25	parallel
Strand 5	B	152	157	parallel
Strand 6	B	180	189	parallel
Strand 7	B	212	217	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	89	93	anti-parallel
Strand 3	C	51	55	parallel
Strand 4	C	126	132	parallel
Strand 5	C	18	25	parallel
Strand 6	C	152	157	parallel
Strand 7	C	180	189	parallel
Strand 8	C	212	217	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	89	93	anti-parallel
Strand 3	D	51	55	parallel
Strand 4	D	126	132	parallel
Strand 5	D	18	26	parallel
Strand 6	D	152	157	parallel
Strand 7	D	180	189	parallel
Strand 8	D	212	217	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	E	89	93	anti-parallel
Strand 3	E	51	55	parallel
Strand 4	E	128	132	parallel
Strand 5	E	20	26	parallel
Strand 6	E	152	157	parallel
Strand 7	E	180	189	parallel
Strand 8	E	212	217	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	86	first strand
Strand 2	F	89	93	anti-parallel
Strand 3	F	51	55	parallel
Strand 4	F	126	132	parallel
Strand 5	F	18	26	parallel
Strand 6	F	152	157	parallel
Strand 7	F	180	189	parallel
Strand 8	F	212	217	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	86	first strand
Strand 2	G	89	93	anti-parallel
Strand 3	G	51	55	parallel
Strand 4	G	126	132	parallel
Strand 5	G	18	25	parallel
Strand 6	G	152	157	parallel
Strand 7	G	180	189	parallel
Strand 8	G	212	217	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	86	first strand
Strand 2	H	89	93	anti-parallel
Strand 3	H	51	55	parallel
Strand 4	H	126	132	parallel
Strand 5	H	18	26	parallel
Strand 6	H	152	157	parallel
Strand 7	H	180	189	parallel
Strand 8	H	212	217	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AUQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AUQ