Analysis of interatomic Contacts of Structural Units in PDB entry:
5AVA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AVA entry

There are 8 chains in PDB entry 5AVA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	THR 259
B	ALA 22	THR 259
C	ALA 22	THR 259
D	ALA 22	THR 259
E	ALA 22	THR 259
F	ALA 22	THR 259
G	ALA 22	THR 259
H	ALA 22	THR 259

There are 25 helices in PDB entry 5AVA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	35	Right-handed 310
Helix 2	AA2	A	123	127	Right-handed 310
Helix 3	AA3	A	136	140	Right-handed 310
Helix 4	AA4	A	217	222	Right-handed alpha
Helix 5	AA5	B	33	35	Right-handed 310
Helix 6	AA6	B	123	127	Right-handed 310
Helix 7	AA7	B	217	222	Right-handed alpha
Helix 8	AA8	C	33	35	Right-handed 310
Helix 9	AA9	C	123	127	Right-handed 310
Helix 10	AB1	C	136	140	Right-handed 310
Helix 11	AB2	C	217	222	Right-handed alpha
Helix 12	AB3	D	33	35	Right-handed 310
Helix 13	AB4	D	123	127	Right-handed 310
Helix 14	AB5	D	217	222	Right-handed alpha
Helix 15	AB6	E	33	35	Right-handed 310
Helix 16	AB7	E	123	127	Right-handed 310
Helix 17	AB8	E	136	140	Right-handed 310
Helix 18	AB9	E	217	222	Right-handed alpha
Helix 19	AC1	F	33	35	Right-handed 310
Helix 20	AC2	F	123	127	Right-handed 310
Helix 21	AC3	G	33	35	Right-handed 310
Helix 22	AC4	G	123	127	Right-handed 310
Helix 23	AC5	H	33	35	Right-handed 310
Helix 24	AC6	H	123	127	Right-handed 310
Helix 25	AC7	H	217	222	Right-handed alpha

There are 24 sheets in PDB entry 5AVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	51	52	anti-parallel
Strand 3	A	245	255	anti-parallel
Strand 4	A	23	29	anti-parallel
Strand 5	C	23	29	anti-parallel
Strand 6	C	245	254	anti-parallel
Strand 7	C	51	52	anti-parallel
Strand 8	C	44	45	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	215	first strand
Strand 2	A	196	202	anti-parallel
Strand 3	A	183	191	anti-parallel
Strand 4	A	88	96	anti-parallel
Strand 5	A	245	255	anti-parallel
Strand 6	A	23	29	anti-parallel
Strand 7	C	23	29	anti-parallel
Strand 8	C	245	254	anti-parallel
Strand 9	C	88	96	anti-parallel
Strand 10	C	183	191	anti-parallel
Strand 11	C	196	203	anti-parallel
Strand 12	C	208	215	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	225	234	anti-parallel
Strand 4	A	76	77	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	225	234	anti-parallel
Strand 4	A	107	115	anti-parallel
Strand 5	A	142	147	anti-parallel
Strand 6	A	160	165	anti-parallel
Strand 7	A	172	175	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	51	52	anti-parallel
Strand 3	B	245	255	anti-parallel
Strand 4	B	23	29	anti-parallel
Strand 5	D	23	29	anti-parallel
Strand 6	D	245	255	anti-parallel
Strand 7	D	51	52	anti-parallel
Strand 8	D	44	45	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	215	first strand
Strand 2	B	196	203	anti-parallel
Strand 3	B	183	191	anti-parallel
Strand 4	B	88	96	anti-parallel
Strand 5	B	245	255	anti-parallel
Strand 6	B	23	29	anti-parallel
Strand 7	D	23	29	anti-parallel
Strand 8	D	245	255	anti-parallel
Strand 9	D	88	96	anti-parallel
Strand 10	D	183	191	anti-parallel
Strand 11	D	196	203	anti-parallel
Strand 12	D	208	215	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	67	72	anti-parallel
Strand 3	B	225	234	anti-parallel
Strand 4	B	76	77	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	67	72	anti-parallel
Strand 3	B	225	234	anti-parallel
Strand 4	B	107	115	anti-parallel
Strand 5	B	142	147	anti-parallel
Strand 6	B	160	165	anti-parallel
Strand 7	B	172	175	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	41	first strand
Strand 2	C	67	72	anti-parallel
Strand 3	C	225	234	anti-parallel
Strand 4	C	76	77	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	41	first strand
Strand 2	C	67	72	anti-parallel
Strand 3	C	225	234	anti-parallel
Strand 4	C	107	115	anti-parallel
Strand 5	C	142	147	anti-parallel
Strand 6	C	160	165	anti-parallel
Strand 7	C	172	175	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	41	first strand
Strand 2	D	67	72	anti-parallel
Strand 3	D	225	234	anti-parallel
Strand 4	D	76	77	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	41	first strand
Strand 2	D	67	72	anti-parallel
Strand 3	D	225	234	anti-parallel
Strand 4	D	107	115	anti-parallel
Strand 5	D	142	147	anti-parallel
Strand 6	D	160	165	anti-parallel
Strand 7	D	172	175	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	E	51	52	anti-parallel
Strand 3	E	245	254	anti-parallel
Strand 4	E	23	29	anti-parallel
Strand 5	F	23	29	anti-parallel
Strand 6	F	245	255	anti-parallel
Strand 7	F	51	52	anti-parallel
Strand 8	F	44	45	anti-parallel

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There are 12 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	215	first strand
Strand 2	E	196	202	anti-parallel
Strand 3	E	184	191	anti-parallel
Strand 4	E	88	96	anti-parallel
Strand 5	E	245	254	anti-parallel
Strand 6	E	23	29	anti-parallel
Strand 7	F	23	29	anti-parallel
Strand 8	F	245	255	anti-parallel
Strand 9	F	88	96	anti-parallel
Strand 10	F	184	191	anti-parallel
Strand 11	F	196	203	anti-parallel
Strand 12	F	208	215	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	41	first strand
Strand 2	E	67	72	anti-parallel
Strand 3	E	225	234	anti-parallel
Strand 4	E	76	77	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	41	first strand
Strand 2	E	67	72	anti-parallel
Strand 3	E	225	234	anti-parallel
Strand 4	E	107	115	anti-parallel
Strand 5	E	142	147	anti-parallel
Strand 6	E	160	165	anti-parallel
Strand 7	E	172	175	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	67	72	anti-parallel
Strand 3	F	225	234	anti-parallel
Strand 4	F	76	77	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	67	72	anti-parallel
Strand 3	F	225	234	anti-parallel
Strand 4	F	107	115	anti-parallel
Strand 5	F	142	147	anti-parallel
Strand 6	F	160	165	anti-parallel
Strand 7	F	172	175	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	45	first strand
Strand 2	G	51	52	anti-parallel
Strand 3	G	245	255	anti-parallel
Strand 4	G	23	29	anti-parallel
Strand 5	H	23	29	anti-parallel
Strand 6	H	245	255	anti-parallel
Strand 7	H	51	52	anti-parallel
Strand 8	H	44	45	anti-parallel

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There are 12 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	209	215	first strand
Strand 2	G	196	202	anti-parallel
Strand 3	G	183	191	anti-parallel
Strand 4	G	88	96	anti-parallel
Strand 5	G	245	255	anti-parallel
Strand 6	G	23	29	anti-parallel
Strand 7	H	23	29	anti-parallel
Strand 8	H	245	255	anti-parallel
Strand 9	H	88	97	anti-parallel
Strand 10	H	182	191	anti-parallel
Strand 11	H	196	203	anti-parallel
Strand 12	H	208	215	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	41	first strand
Strand 2	G	67	72	anti-parallel
Strand 3	G	225	234	anti-parallel
Strand 4	G	76	77	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	41	first strand
Strand 2	G	67	72	anti-parallel
Strand 3	G	225	234	anti-parallel
Strand 4	G	107	115	anti-parallel
Strand 5	G	142	147	anti-parallel
Strand 6	G	160	165	anti-parallel
Strand 7	G	173	175	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	41	first strand
Strand 2	H	67	72	anti-parallel
Strand 3	H	225	234	anti-parallel
Strand 4	H	76	77	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	41	first strand
Strand 2	H	67	72	anti-parallel
Strand 3	H	225	234	anti-parallel
Strand 4	H	107	114	anti-parallel
Strand 5	H	142	147	anti-parallel
Strand 6	H	160	165	anti-parallel
Strand 7	H	172	175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AVA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AVA