Analysis of interatomic Contacts of Structural Units in PDB entry:
5AVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AVD entry

There is 1 chain in PDB entry 5AVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 16ASN 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5AVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 63Right-handed 310
Helix 2
AA2
A
102 106Right-handed 310
Helix 3
AA3
A
169 174Right-handed alpha
Helix 4
AA4
A
179 183Right-handed 310
Helix 5
AA5
A
244 254Right-handed alpha
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There are 2 sheets in PDB entry 5AVD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
161 164anti-parallel
Strand 3
A
142 146anti-parallel
Strand 4
A
206 211anti-parallel
Strand 5
A
214 223anti-parallel
Strand 6
A
236 240anti-parallel
Strand 7
A
187 190anti-parallel
Strand 8
A
167 168anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 37first strand
Strand 2
A
40 51anti-parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
110 114anti-parallel
Strand 5
A
85 94anti-parallel
Strand 6
A
68 72anti-parallel
Strand 7
A
30 37anti-parallel
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