Analysis of interatomic Contacts of Structural Units in PDB entry:
5AVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AVE entry

There is 1 chain in PDB entry 5AVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 57HIS 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5AVE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 102Right-handed alpha
Helix 2
AA2
A
104 113Right-handed alpha
Helix 3
AA3
A
114 121Right-handed alpha
Helix 4
AA4
A
148 151Right-handed 310
Helix 5
AA5
A
152 162Right-handed alpha
Helix 6
AA6
A
204 212Right-handed alpha
Helix 7
AA7
A
236 240Right-handed 310
Helix 8
AA8
A
244 249Right-handed alpha
Helix 9
AA9
A
286 307Right-handed alpha
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There are 3 sheets in PDB entry 5AVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
194 203anti-parallel
Strand 4
A
178 187anti-parallel
Strand 5
A
165 166anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
194 203anti-parallel
Strand 4
A
178 187anti-parallel
Strand 5
A
170 171anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
279 285anti-parallel
Strand 4
A
265 274anti-parallel
Strand 5
A
258 262anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il