Analysis of interatomic Contacts of Structural Units in PDB entry:
5AVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AVI entry

There are 4 chains in PDB entry 5AVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 204HIS 446
B
 SER 682GLU 696
C
 PRO 204HIS 446
D
 SER 682GLU 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5AVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
207 221Right-handed alpha
Helix 2
AA2
A
246 275Right-handed alpha
Helix 3
AA3
A
282 305Right-handed alpha
Helix 4
AA4
A
322 329Right-handed alpha
Helix 5
AA5
A
332 350Right-handed alpha
Helix 6
AA6
A
352 365Right-handed alpha
Helix 7
AA7
A
374 397Right-handed alpha
Helix 8
AA8
A
402 431Right-handed alpha
Helix 9
AA9
A
436 444Right-handed alpha
Helix 10
AB1
B
687 696Right-handed alpha
Helix 11
AB2
C
207 222Right-handed alpha
Helix 12
AB3
C
247 273Right-handed alpha
Helix 13
AB4
C
282 305Right-handed alpha
Helix 14
AB5
C
322 329Right-handed alpha
Helix 15
AB6
C
332 348Right-handed alpha
Helix 16
AB7
C
352 365Right-handed alpha
Helix 17
AB8
C
374 397Right-handed alpha
Helix 18
AB9
C
402 409Right-handed alpha
Helix 19
AC1
C
409 431Right-handed alpha
Helix 20
AC2
C
436 444Right-handed alpha
Helix 21
AC3
D
687 696Right-handed alpha
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There are 2 sheets in PDB entry 5AVI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
312 315anti-parallel
Strand 3
A
319 321anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
306 307first strand
Strand 2
C
312 315anti-parallel
Strand 3
C
319 321anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il