Analysis of interatomic Contacts of Structural Units in PDB entry:
5AVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AVP entry

There are 4 chains in PDB entry 5AVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	GLN 253
B	ALA 6	GLN 253
C	ALA 6	GLN 253
D	ALA 6	GLN 253

There are 32 helices in PDB entry 5AVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	29	Right-handed alpha
Helix 2	AA2	A	34	38	Right-handed 310
Helix 3	AA3	A	47	51	Right-handed 310
Helix 4	AA4	A	52	57	Right-handed alpha
Helix 5	AA5	A	82	92	Right-handed 310
Helix 6	AA6	A	165	169	Right-handed 310
Helix 7	AA7	A	227	231	Right-handed 310
Helix 8	AA8	A	240	248	Right-handed alpha
Helix 9	AA9	B	11	29	Right-handed alpha
Helix 10	AB1	B	34	38	Right-handed 310
Helix 11	AB2	B	47	51	Right-handed 310
Helix 12	AB3	B	52	57	Right-handed alpha
Helix 13	AB4	B	82	92	Right-handed 310
Helix 14	AB5	B	165	169	Right-handed 310
Helix 15	AB6	B	227	231	Right-handed 310
Helix 16	AB7	B	240	248	Right-handed alpha
Helix 17	AB8	C	11	29	Right-handed alpha
Helix 18	AB9	C	34	38	Right-handed 310
Helix 19	AC1	C	47	51	Right-handed 310
Helix 20	AC2	C	52	57	Right-handed alpha
Helix 21	AC3	C	82	92	Right-handed 310
Helix 22	AC4	C	165	169	Right-handed 310
Helix 23	AC5	C	227	231	Right-handed 310
Helix 24	AC6	C	240	248	Right-handed alpha
Helix 25	AC7	D	11	29	Right-handed alpha
Helix 26	AC8	D	34	38	Right-handed 310
Helix 27	AC9	D	47	51	Right-handed 310
Helix 28	AD1	D	52	57	Right-handed alpha
Helix 29	AD2	D	82	92	Right-handed 310
Helix 30	AD3	D	165	169	Right-handed 310
Helix 31	AD4	D	227	231	Right-handed 310
Helix 32	AD5	D	240	248	Right-handed alpha

There are 8 sheets in PDB entry 5AVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	66	75	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	204	210	anti-parallel
Strand 5	A	117	123	anti-parallel
Strand 6	A	184	186	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	178	first strand
Strand 2	A	125	130	anti-parallel
Strand 3	A	192	195	anti-parallel
Strand 4	A	106	111	anti-parallel
Strand 5	A	237	238	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	66	75	anti-parallel
Strand 3	B	94	101	anti-parallel
Strand 4	B	204	210	anti-parallel
Strand 5	B	117	123	anti-parallel
Strand 6	B	184	186	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	178	first strand
Strand 2	B	125	130	anti-parallel
Strand 3	B	192	195	anti-parallel
Strand 4	B	106	111	anti-parallel
Strand 5	B	237	238	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	204	210	anti-parallel
Strand 5	C	117	123	anti-parallel
Strand 6	C	184	186	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	178	first strand
Strand 2	C	125	130	anti-parallel
Strand 3	C	192	195	anti-parallel
Strand 4	C	106	111	anti-parallel
Strand 5	C	237	238	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	66	75	anti-parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	204	210	anti-parallel
Strand 5	D	117	123	anti-parallel
Strand 6	D	184	186	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	178	first strand
Strand 2	D	125	130	anti-parallel
Strand 3	D	192	195	anti-parallel
Strand 4	D	106	111	anti-parallel
Strand 5	D	237	238	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AVP