Analysis of interatomic Contacts of Structural Units in PDB entry:
5AWB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AWB entry

There is 1 chain in PDB entry 5AWB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 30LEU 817
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5AWB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
162 167Right-handed alpha
Helix 2
AA2
A
270 274Right-handed 310
Helix 3
AA3
A
303 308Right-handed 310
Helix 4
AA4
A
323 329Right-handed alpha
Helix 5
AA5
A
330 336Right-handed 310
Helix 6
AA6
A
360 366Right-handed 310
Helix 7
AA7
A
383 391Right-handed 310
Helix 8
AA8
A
411 415Right-handed 310
Helix 9
AA9
A
476 481Right-handed alpha
Helix 10
AB1
A
564 569Right-handed alpha
Helix 11
AB2
A
577 583Right-handed 310
Helix 12
AB3
A
619 624Right-handed alpha
Helix 13
AB4
A
655 661Right-handed alpha
Helix 14
AB5
A
680 687Right-handed 310
Helix 15
AB6
A
706 711Right-handed alpha
Helix 16
AB7
A
777 779Right-handed 310
Helix 17
AB8
A
780 790Right-handed alpha
Helix 18
AB9
A
797 801Right-handed 310
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There are 6 sheets in PDB entry 5AWB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 28 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 38first strand
Strand 2
A
46 48anti-parallel
Strand 3
A
67 69parallel
Strand 4
A
91 93parallel
Strand 5
A
129 131parallel
Strand 6
A
150 152parallel
Strand 7
A
174 176parallel
Strand 8
A
205 207parallel
Strand 9
A
226 228parallel
Strand 10
A
250 252parallel
Strand 11
A
291 293parallel
Strand 12
A
315 317parallel
Strand 13
A
341 343parallel
Strand 14
A
371 373parallel
Strand 15
A
398 400parallel
Strand 16
A
422 424parallel
Strand 17
A
485 487parallel
Strand 18
A
509 511parallel
Strand 19
A
534 536parallel
Strand 20
A
558 560parallel
Strand 21
A
588 590parallel
Strand 22
A
612 614parallel
Strand 23
A
643 645parallel
Strand 24
A
668 670parallel
Strand 25
A
692 694parallel
Strand 26
A
716 718parallel
Strand 27
A
740 742parallel
Strand 28
A
766 768parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
77 78first strand
Strand 2
A
115 116parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
160 161first strand
Strand 2
A
191 192parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
236 237first strand
Strand 2
A
277 278parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
381 382first strand
Strand 2
A
408 409parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
774 775first strand
Strand 2
A
803 805parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il