Analysis of interatomic Contacts of Structural Units in PDB entry:
5AWF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AWF entry

There are 5 chains in PDB entry 5AWF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	GLY 495
B	SER 8	GLY 421
C	MET 1	TRP 243
D	MET 1	GLN 235
E	LYS 36	ASN 39

There are 73 helices in PDB entry 5AWF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	47	Right-handed alpha
Helix 2	AA2	A	53	70	Right-handed alpha
Helix 3	AA3	A	169	176	Right-handed alpha
Helix 4	AA4	A	176	184	Right-handed alpha
Helix 5	AA5	A	193	201	Right-handed alpha
Helix 6	AA6	A	441	451	Right-handed alpha
Helix 7	AA7	A	454	467	Right-handed alpha
Helix 8	AA8	A	467	472	Right-handed alpha
Helix 9	AA9	A	475	494	Right-handed alpha
Helix 10	AB1	B	9	19	Right-handed alpha
Helix 11	AB2	B	26	40	Right-handed alpha
Helix 12	AB3	B	54	59	Right-handed alpha
Helix 13	AB4	B	70	78	Right-handed alpha
Helix 14	AB5	B	95	98	Right-handed 310
Helix 15	AB6	B	124	134	Right-handed alpha
Helix 16	AB7	B	368	377	Right-handed alpha
Helix 17	AB8	B	381	399	Right-handed alpha
Helix 18	AB9	B	403	416	Right-handed alpha
Helix 19	AC1	C	39	49	Right-handed alpha
Helix 20	AC2	C	71	78	Right-handed alpha
Helix 21	AC3	C	95	109	Right-handed alpha
Helix 22	AC4	C	110	112	Right-handed 310
Helix 23	AC5	C	116	131	Right-handed alpha
Helix 24	AC6	C	136	139	Right-handed 310
Helix 25	AC7	C	147	160	Right-handed alpha
Helix 26	AC8	C	177	190	Right-handed alpha
Helix 27	AC9	C	206	211	Right-handed alpha
Helix 28	AD1	C	230	240	Right-handed alpha
Helix 29	AD2	D	39	49	Right-handed alpha
Helix 30	AD3	D	71	78	Right-handed alpha
Helix 31	AD4	D	95	110	Right-handed alpha
Helix 32	AD5	D	116	132	Right-handed alpha
Helix 33	AD6	D	136	139	Right-handed 310
Helix 34	AD7	D	147	163	Right-handed alpha
Helix 35	AD8	D	177	190	Right-handed alpha
Helix 36	AD9	D	206	211	Right-handed alpha
Helix 37	AE1	E	39	47	Right-handed alpha
Helix 38	AE2	E	53	69	Right-handed alpha
Helix 39	AE3	E	168	176	Right-handed alpha
Helix 40	AE4	E	176	184	Right-handed alpha
Helix 41	AE5	E	193	203	Right-handed alpha
Helix 42	AE6	E	441	451	Right-handed alpha
Helix 43	AE7	E	454	472	Right-handed alpha
Helix 44	AE8	E	475	495	Right-handed alpha
Helix 45	AE9	F	9	19	Right-handed alpha
Helix 46	AF1	F	26	40	Right-handed alpha
Helix 47	AF2	F	54	59	Right-handed alpha
Helix 48	AF3	F	70	78	Right-handed alpha
Helix 49	AF4	F	95	98	Right-handed 310
Helix 50	AF5	F	124	134	Right-handed alpha
Helix 51	AF6	F	368	378	Right-handed alpha
Helix 52	AF7	F	381	400	Right-handed alpha
Helix 53	AF8	F	403	418	Right-handed alpha
Helix 54	AF9	G	39	49	Right-handed alpha
Helix 55	AG1	G	68	70	Right-handed 310
Helix 56	AG2	G	71	78	Right-handed alpha
Helix 57	AG3	G	95	109	Right-handed alpha
Helix 58	AG4	G	110	112	Right-handed 310
Helix 59	AG5	G	116	131	Right-handed alpha
Helix 60	AG6	G	134	139	Right-handed 310
Helix 61	AG7	G	147	162	Right-handed alpha
Helix 62	AG8	G	177	192	Right-handed alpha
Helix 63	AG9	G	206	211	Right-handed alpha
Helix 64	AH1	G	229	237	Right-handed alpha
Helix 65	AH2	H	39	49	Right-handed alpha
Helix 66	AH3	H	71	78	Right-handed alpha
Helix 67	AH4	H	95	109	Right-handed alpha
Helix 68	AH5	H	116	131	Right-handed alpha
Helix 69	AH6	H	136	139	Right-handed 310
Helix 70	AH7	H	147	162	Right-handed alpha
Helix 71	AH8	H	177	190	Right-handed alpha
Helix 72	AH9	H	206	211	Right-handed alpha
Helix 73	AI1	H	229	234	Right-handed 310

There are 21 sheets in PDB entry 5AWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	168	first strand
Strand 2	A	206	211	anti-parallel
Strand 3	A	235	242	parallel
Strand 4	A	264	273	parallel
Strand 5	A	298	307	parallel
Strand 6	A	331	334	parallel
Strand 7	A	360	363	parallel
Strand 8	A	383	392	parallel
Strand 9	A	415	424	parallel
Strand 10	B	342	351	anti-parallel
Strand 11	B	310	319	parallel
Strand 12	B	281	290	parallel
Strand 13	B	252	261	parallel
Strand 14	B	226	235	parallel
Strand 15	B	197	207	parallel
Strand 16	B	165	177	parallel
Strand 17	B	137	142	parallel
Strand 18	B	107	111	anti-parallel

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There are 17 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	168	first strand
Strand 2	A	206	211	anti-parallel
Strand 3	A	235	242	parallel
Strand 4	A	264	273	parallel
Strand 5	A	298	307	parallel
Strand 6	A	325	328	parallel
Strand 7	A	354	357	parallel
Strand 8	A	383	392	parallel
Strand 9	A	415	424	parallel
Strand 10	B	342	351	anti-parallel
Strand 11	B	310	319	parallel
Strand 12	B	281	290	parallel
Strand 13	B	252	261	parallel
Strand 14	B	226	235	parallel
Strand 15	B	197	207	parallel
Strand 16	B	165	177	parallel
Strand 17	B	61	63	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	247	257	parallel
Strand 3	A	225	226	parallel

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There are 18 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	247	257	parallel
Strand 3	A	278	288	parallel
Strand 4	A	313	321	parallel
Strand 5	A	340	349	parallel
Strand 6	A	369	379	parallel
Strand 7	A	400	410	parallel
Strand 8	A	430	439	parallel
Strand 9	B	356	365	anti-parallel
Strand 10	B	326	336	parallel
Strand 11	B	296	305	parallel
Strand 12	B	267	274	parallel
Strand 13	B	240	247	parallel
Strand 14	B	212	219	parallel
Strand 15	B	182	191	parallel
Strand 16	B	152	158	parallel
Strand 17	B	84	89	parallel
Strand 18	B	92	93	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	24	first strand
Strand 2	C	2	11	anti-parallel
Strand 3	C	53	55	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	24	first strand
Strand 2	C	2	11	anti-parallel
Strand 3	C	59	62	anti-parallel
Strand 4	C	65	66	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	83	first strand
Strand 2	C	166	170	parallel
Strand 3	C	197	201	parallel
Strand 4	C	29	33	parallel
Strand 5	C	215	220	parallel
Strand 6	C	223	228	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	94	first strand
Strand 2	C	141	142	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	24	first strand
Strand 2	D	2	10	anti-parallel
Strand 3	D	54	62	anti-parallel
Strand 4	D	65	66	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	166	170	parallel
Strand 3	D	197	201	parallel
Strand 4	D	29	33	parallel
Strand 5	D	215	220	parallel
Strand 6	D	223	228	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	94	first strand
Strand 2	D	141	142	anti-parallel

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There are 18 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	167	first strand
Strand 2	E	206	211	anti-parallel
Strand 3	E	237	242	parallel
Strand 4	E	268	273	parallel
Strand 5	E	297	307	parallel
Strand 6	E	325	328	parallel
Strand 7	E	354	357	parallel
Strand 8	E	383	392	parallel
Strand 9	E	415	424	parallel
Strand 10	F	342	351	anti-parallel
Strand 11	F	310	319	parallel
Strand 12	F	281	290	parallel
Strand 13	F	252	261	parallel
Strand 14	F	226	235	parallel
Strand 15	F	197	207	parallel
Strand 16	F	166	177	parallel
Strand 17	F	137	142	parallel
Strand 18	F	107	111	anti-parallel

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There are 14 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	265	first strand
Strand 2	E	297	307	parallel
Strand 3	E	331	334	parallel
Strand 4	E	360	363	parallel
Strand 5	E	383	392	parallel
Strand 6	E	415	424	parallel
Strand 7	F	342	351	anti-parallel
Strand 8	F	310	319	parallel
Strand 9	F	281	290	parallel
Strand 10	F	252	261	parallel
Strand 11	F	226	235	parallel
Strand 12	F	197	207	parallel
Strand 13	F	166	177	parallel
Strand 14	F	62	63	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	222	first strand
Strand 2	E	247	258	parallel
Strand 3	E	225	226	parallel

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There are 18 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	222	first strand
Strand 2	E	247	258	parallel
Strand 3	E	278	289	parallel
Strand 4	E	313	321	parallel
Strand 5	E	340	349	parallel
Strand 6	E	369	379	parallel
Strand 7	E	400	410	parallel
Strand 8	E	430	439	parallel
Strand 9	F	356	365	anti-parallel
Strand 10	F	326	336	parallel
Strand 11	F	296	305	parallel
Strand 12	F	267	274	parallel
Strand 13	F	240	247	parallel
Strand 14	F	212	219	parallel
Strand 15	F	182	191	parallel
Strand 16	F	152	158	parallel
Strand 17	F	84	89	parallel
Strand 18	F	92	93	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	24	first strand
Strand 2	G	2	10	anti-parallel
Strand 3	G	54	62	anti-parallel
Strand 4	G	65	66	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	83	first strand
Strand 2	G	166	170	parallel
Strand 3	G	197	201	parallel
Strand 4	G	29	33	parallel
Strand 5	G	215	220	parallel
Strand 6	G	223	228	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	94	first strand
Strand 2	G	141	142	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	23	first strand
Strand 2	H	2	10	anti-parallel
Strand 3	H	54	62	anti-parallel
Strand 4	H	65	66	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	83	first strand
Strand 2	H	166	170	parallel
Strand 3	H	197	201	parallel
Strand 4	H	29	33	parallel
Strand 5	H	215	220	parallel
Strand 6	H	223	224	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	94	first strand
Strand 2	H	141	142	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AWF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AWF