Analysis of interatomic Contacts of Structural Units in PDB entry:
5AWG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AWG entry

There are 8 chains in PDB entry 5AWG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	VAL 494
B	GLN 61	GLY 421
C	MET 1	GLU 237
D	MET 1	GLN 235
E	ILE 38	GLU 491
F	GLY 67	GLY 421
G	MET 1	GLN 239
H	MET 1	LEU 236

There are 66 helices in PDB entry 5AWG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	47	Right-handed alpha
Helix 2	AA2	A	53	70	Right-handed alpha
Helix 3	AA3	A	169	176	Right-handed alpha
Helix 4	AA4	A	176	184	Right-handed alpha
Helix 5	AA5	A	193	201	Right-handed alpha
Helix 6	AA6	A	441	451	Right-handed alpha
Helix 7	AA7	A	454	467	Right-handed alpha
Helix 8	AA8	A	467	472	Right-handed alpha
Helix 9	AA9	A	475	494	Right-handed alpha
Helix 10	AB1	B	70	78	Right-handed alpha
Helix 11	AB2	B	95	98	Right-handed 310
Helix 12	AB3	B	124	134	Right-handed alpha
Helix 13	AB4	B	368	377	Right-handed alpha
Helix 14	AB5	B	381	394	Right-handed alpha
Helix 15	AB6	B	394	399	Right-handed alpha
Helix 16	AB7	B	403	416	Right-handed alpha
Helix 17	AB8	C	39	49	Right-handed alpha
Helix 18	AB9	C	68	70	Right-handed 310
Helix 19	AC1	C	71	79	Right-handed alpha
Helix 20	AC2	C	94	109	Right-handed alpha
Helix 21	AC3	C	110	112	Right-handed 310
Helix 22	AC4	C	116	131	Right-handed alpha
Helix 23	AC5	C	147	163	Right-handed alpha
Helix 24	AC6	C	177	190	Right-handed alpha
Helix 25	AC7	C	205	210	Right-handed 310
Helix 26	AC8	C	231	236	Right-handed alpha
Helix 27	AC9	D	39	49	Right-handed alpha
Helix 28	AD1	D	68	70	Right-handed 310
Helix 29	AD2	D	71	79	Right-handed alpha
Helix 30	AD3	D	94	110	Right-handed alpha
Helix 31	AD4	D	116	131	Right-handed alpha
Helix 32	AD5	D	147	163	Right-handed alpha
Helix 33	AD6	D	177	190	Right-handed alpha
Helix 34	AD7	D	204	210	Right-handed 310
Helix 35	AD8	E	39	47	Right-handed alpha
Helix 36	AD9	E	53	69	Right-handed alpha
Helix 37	AE1	E	169	176	Right-handed alpha
Helix 38	AE2	E	176	182	Right-handed alpha
Helix 39	AE3	E	193	203	Right-handed alpha
Helix 40	AE4	E	441	451	Right-handed alpha
Helix 41	AE5	E	454	472	Right-handed alpha
Helix 42	AE6	E	475	491	Right-handed alpha
Helix 43	AE7	F	70	78	Right-handed alpha
Helix 44	AE8	F	95	98	Right-handed 310
Helix 45	AE9	F	124	134	Right-handed alpha
Helix 46	AF1	F	368	378	Right-handed alpha
Helix 47	AF2	F	381	399	Right-handed alpha
Helix 48	AF3	F	403	418	Right-handed alpha
Helix 49	AF4	G	39	49	Right-handed alpha
Helix 50	AF5	G	68	70	Right-handed 310
Helix 51	AF6	G	71	79	Right-handed alpha
Helix 52	AF7	G	94	109	Right-handed alpha
Helix 53	AF8	G	118	131	Right-handed alpha
Helix 54	AF9	G	147	162	Right-handed alpha
Helix 55	AG1	G	177	192	Right-handed alpha
Helix 56	AG2	G	204	210	Right-handed 310
Helix 57	AG3	G	230	237	Right-handed alpha
Helix 58	AG4	H	39	49	Right-handed alpha
Helix 59	AG5	H	68	70	Right-handed 310
Helix 60	AG6	H	71	79	Right-handed alpha
Helix 61	AG7	H	94	109	Right-handed alpha
Helix 62	AG8	H	116	131	Right-handed alpha
Helix 63	AG9	H	147	163	Right-handed alpha
Helix 64	AH1	H	177	190	Right-handed alpha
Helix 65	AH2	H	204	210	Right-handed 310
Helix 66	AH3	H	229	234	Right-handed 310

There are 18 sheets in PDB entry 5AWG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	168	first strand
Strand 2	A	206	211	anti-parallel
Strand 3	A	237	242	parallel
Strand 4	A	268	273	parallel
Strand 5	A	304	307	parallel
Strand 6	A	332	334	parallel
Strand 7	A	354	363	parallel
Strand 8	A	383	392	parallel
Strand 9	A	421	424	parallel
Strand 10	B	342	351	anti-parallel
Strand 11	B	310	319	parallel
Strand 12	B	281	290	parallel
Strand 13	B	252	261	parallel
Strand 14	B	226	235	parallel
Strand 15	B	197	207	parallel
Strand 16	B	166	177	parallel
Strand 17	B	62	63	parallel

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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	298	300	parallel
Strand 3	A	325	328	parallel
Strand 4	A	354	363	parallel
Strand 5	A	383	392	parallel
Strand 6	A	415	418	parallel
Strand 7	B	342	351	anti-parallel
Strand 8	B	310	319	parallel
Strand 9	B	281	290	parallel
Strand 10	B	252	261	parallel
Strand 11	B	226	235	parallel
Strand 12	B	197	207	parallel
Strand 13	B	166	177	parallel
Strand 14	B	137	142	parallel
Strand 15	B	107	111	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	298	300	parallel
Strand 3	A	325	328	parallel
Strand 4	A	354	363	parallel
Strand 5	A	332	334	parallel
Strand 6	A	304	307	parallel
Strand 7	A	268	273	parallel
Strand 8	A	237	242	parallel
Strand 9	A	206	211	parallel
Strand 10	A	165	168	anti-parallel

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There are 18 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	247	252	parallel
Strand 3	A	278	286	parallel
Strand 4	A	313	321	parallel
Strand 5	A	340	349	parallel
Strand 6	A	369	379	parallel
Strand 7	A	400	410	parallel
Strand 8	A	430	439	parallel
Strand 9	B	357	366	anti-parallel
Strand 10	B	327	336	parallel
Strand 11	B	296	305	parallel
Strand 12	B	267	274	parallel
Strand 13	B	240	247	parallel
Strand 14	B	212	220	parallel
Strand 15	B	182	191	parallel
Strand 16	B	152	158	parallel
Strand 17	B	84	89	parallel
Strand 18	B	92	93	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	24	first strand
Strand 2	C	2	11	anti-parallel
Strand 3	C	53	55	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	24	first strand
Strand 2	C	2	11	anti-parallel
Strand 3	C	59	62	anti-parallel
Strand 4	C	65	66	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	83	first strand
Strand 2	C	166	170	parallel
Strand 3	C	197	201	parallel
Strand 4	C	29	33	parallel
Strand 5	C	215	220	parallel
Strand 6	C	223	228	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	2	11	anti-parallel
Strand 3	D	20	24	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	2	11	anti-parallel
Strand 3	D	54	62	anti-parallel
Strand 4	D	65	66	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	166	170	parallel
Strand 3	D	197	201	parallel
Strand 4	D	29	33	parallel
Strand 5	D	215	220	parallel
Strand 6	D	223	228	anti-parallel

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There are 18 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	168	first strand
Strand 2	E	206	211	anti-parallel
Strand 3	E	237	242	parallel
Strand 4	E	268	273	parallel
Strand 5	E	302	307	parallel
Strand 6	E	331	334	parallel
Strand 7	E	354	363	parallel
Strand 8	E	383	392	parallel
Strand 9	E	415	424	parallel
Strand 10	F	342	351	anti-parallel
Strand 11	F	310	319	parallel
Strand 12	F	281	290	parallel
Strand 13	F	252	261	parallel
Strand 14	F	231	235	parallel
Strand 15	F	198	207	parallel
Strand 16	F	168	177	parallel
Strand 17	F	137	142	parallel
Strand 18	F	106	111	anti-parallel

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There are 15 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	265	first strand
Strand 2	E	298	299	parallel
Strand 3	E	325	328	parallel
Strand 4	E	354	363	parallel
Strand 5	E	383	392	parallel
Strand 6	E	415	424	parallel
Strand 7	F	342	351	anti-parallel
Strand 8	F	310	319	parallel
Strand 9	F	281	290	parallel
Strand 10	F	252	261	parallel
Strand 11	F	226	229	parallel
Strand 12	F	198	207	parallel
Strand 13	F	168	177	parallel
Strand 14	F	137	142	parallel
Strand 15	F	106	111	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	222	first strand
Strand 2	E	247	252	parallel
Strand 3	E	278	288	parallel
Strand 4	E	255	257	parallel

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There are 18 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	222	first strand
Strand 2	E	247	252	parallel
Strand 3	E	278	288	parallel
Strand 4	E	313	321	parallel
Strand 5	E	340	349	parallel
Strand 6	E	369	379	parallel
Strand 7	E	400	410	parallel
Strand 8	E	430	439	parallel
Strand 9	F	357	365	anti-parallel
Strand 10	F	327	336	parallel
Strand 11	F	296	305	parallel
Strand 12	F	267	274	parallel
Strand 13	F	240	247	parallel
Strand 14	F	212	220	parallel
Strand 15	F	182	191	parallel
Strand 16	F	152	158	parallel
Strand 17	F	84	89	parallel
Strand 18	F	92	93	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	24	first strand
Strand 2	G	2	11	anti-parallel
Strand 3	G	53	62	anti-parallel
Strand 4	G	65	66	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	83	first strand
Strand 2	G	166	170	parallel
Strand 3	G	197	201	parallel
Strand 4	G	29	33	parallel
Strand 5	G	215	220	parallel
Strand 6	G	223	228	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	24	first strand
Strand 2	H	2	10	anti-parallel
Strand 3	H	54	62	anti-parallel
Strand 4	H	65	66	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	83	first strand
Strand 2	H	166	170	parallel
Strand 3	H	197	201	parallel
Strand 4	H	29	33	parallel
Strand 5	H	215	219	parallel
Strand 6	H	224	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AWG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AWG