Analysis of interatomic Contacts of Structural Units in PDB entry:
5AWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AWM entry

There is 1 chain in PDB entry 5AWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 7TYR 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5AWM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
61 78Right-handed alpha
Helix 2
AA2
A
113 119Right-handed alpha
Helix 3
AA3
A
122 143Right-handed alpha
Helix 4
AA4
A
151 153Right-handed 310
Helix 5
AA5
A
191 196Right-handed alpha
Helix 6
AA6
A
203 219Right-handed alpha
Helix 7
AA7
A
227 240Right-handed alpha
Helix 8
AA8
A
243 249Right-handed alpha
Helix 9
AA9
A
251 260Right-handed alpha
Helix 10
AB1
A
268 273Right-handed alpha
Helix 11
AB2
A
274 278Right-handed 310
Helix 12
AB3
A
285 301Right-handed alpha
Helix 13
AB4
A
304 308Right-handed 310
Helix 14
AB5
A
310 317Right-handed alpha
Helix 15
AB6
A
320 324Right-handed 310
Helix 16
AB7
A
325 330Right-handed alpha
Helix 17
AB8
A
347 362Right-handed alpha
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There are 3 sheets in PDB entry 5AWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
8 13first strand
Strand 2
A
16 21anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
24 29first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
101 107anti-parallel
Strand 5
A
88 90anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
111 112first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
163 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il