Analysis of interatomic Contacts of Structural Units in PDB entry:
5AWQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AWQ entry

There are 2 chains in PDB entry 5AWQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11VAL 242
A
 PRO 244MET 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5AWQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 31Right-handed alpha
Helix 2
AA2
A
39 47Right-handed alpha
Helix 3
AA3
A
51 66Right-handed alpha
Helix 4
AA4
A
67 70Right-handed 310
Helix 5
AA5
A
102 113Right-handed alpha
Helix 6
AA6
A
128 132Right-handed alpha
Helix 7
AA7
A
147 150Right-handed 310
Helix 8
AA8
A
157 161Right-handed 310
Helix 9
AA9
A
174 190Right-handed alpha
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
218 234Right-handed alpha
Helix 12
AB3
A
246 257Right-handed alpha
Helix 13
AB4
A
269 276Right-handed alpha
Helix 14
AB5
A
290 299Right-handed alpha
Helix 15
AB6
A
300 302Right-handed 310
Helix 16
AB7
A
315 319Right-handed 310
Helix 17
AB8
A
321 336Right-handed alpha
Helix 18
AB9
A
351 356Right-handed 310
Helix 19
AC1
A
357 367Right-handed alpha
Helix 20
AC2
A
383 385Right-handed 310
Helix 21
AC3
A
465 467Right-handed 310
Helix 22
AC4
A
475 477Right-handed 310
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There are 9 sheets in PDB entry 5AWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
551 560anti-parallel
Strand 3
A
538 545anti-parallel
Strand 4
A
581 588anti-parallel
Strand 5
A
511 518anti-parallel
Strand 6
A
478 480anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
259 261parallel
Strand 3
A
238 241parallel
Strand 4
A
193 196parallel
Strand 5
A
116 120parallel
Strand 6
A
73 75parallel
Strand 7
A
35 38parallel
Strand 8
A
339 341parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
165 167anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
141 145anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
211 212anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 374first strand
Strand 2
A
387 395anti-parallel
Strand 3
A
401 406anti-parallel
Strand 4
A
456 462anti-parallel
Strand 5
A
430 434anti-parallel
Strand 6
A
439 444anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 419first strand
Strand 2
A
446 451anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 473first strand
Strand 2
A
597 605anti-parallel
Strand 3
A
497 501anti-parallel
Strand 4
A
484 486anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 473first strand
Strand 2
A
597 605anti-parallel
Strand 3
A
522 531anti-parallel
Strand 4
A
570 578anti-parallel
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