Analysis of interatomic Contacts of Structural Units in PDB entry:
5AX7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AX7 entry

There are 2 chains in PDB entry 5AX7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 54PHE 401
B
 LYS 55PHE 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5AX7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 87Right-handed alpha
Helix 2
AA2
A
103 120Right-handed alpha
Helix 3
AA3
A
135 145Right-handed alpha
Helix 4
AA4
A
147 149Right-handed 310
Helix 5
AA5
A
165 179Right-handed alpha
Helix 6
AA6
A
195 209Right-handed alpha
Helix 7
AA7
A
218 230Right-handed alpha
Helix 8
AA8
A
240 246Right-handed 310
Helix 9
AA9
A
248 255Right-handed alpha
Helix 10
AB1
A
302 307Right-handed alpha
Helix 11
AB2
A
311 329Right-handed alpha
Helix 12
AB3
A
337 348Right-handed alpha
Helix 13
AB4
A
362 370Right-handed alpha
Helix 14
AB5
A
371 374Right-handed 310
Helix 15
AB6
A
384 399Right-handed alpha
Helix 16
AB7
B
61 87Right-handed alpha
Helix 17
AB8
B
103 120Right-handed alpha
Helix 18
AB9
B
135 145Right-handed alpha
Helix 19
AC1
B
147 149Right-handed 310
Helix 20
AC2
B
165 179Right-handed alpha
Helix 21
AC3
B
195 209Right-handed alpha
Helix 22
AC4
B
218 230Right-handed alpha
Helix 23
AC5
B
240 246Right-handed 310
Helix 24
AC6
B
248 255Right-handed alpha
Helix 25
AC7
B
302 307Right-handed alpha
Helix 26
AC8
B
311 329Right-handed alpha
Helix 27
AC9
B
337 348Right-handed alpha
Helix 28
AD1
B
362 370Right-handed alpha
Helix 29
AD2
B
371 374Right-handed 310
Helix 30
AD3
B
384 399Right-handed alpha
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There are 6 sheets in PDB entry 5AX7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 128first strand
Strand 2
A
92 96parallel
Strand 3
A
151 155parallel
Strand 4
A
183 186parallel
Strand 5
A
212 216parallel
Strand 6
A
235 237parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
189 192parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
261 264parallel
Strand 3
A
332 335parallel
Strand 4
A
351 354parallel
Strand 5
A
379 382parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 128first strand
Strand 2
B
92 96parallel
Strand 3
B
151 155parallel
Strand 4
B
183 186parallel
Strand 5
B
212 216parallel
Strand 6
B
235 237parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 162first strand
Strand 2
B
189 192parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 293first strand
Strand 2
B
261 264parallel
Strand 3
B
332 335parallel
Strand 4
B
351 354parallel
Strand 5
B
379 382parallel
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