Analysis of interatomic Contacts of Structural Units in PDB entry:
5AXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AXI entry

There are 5 chains in PDB entry 5AXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 38THR 342
B
 ALA 40LEU 341
C
 ASP 42ASP 340
E
 ASP 1GLY 2
E
 MET 4PRO 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 5AXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 61Right-handed alpha
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
73 95Right-handed alpha
Helix 4
AA4
A
97 104Right-handed alpha
Helix 5
AA5
A
104 129Right-handed alpha
Helix 6
AA6
A
130 134Right-handed 310
Helix 7
AA7
A
137 161Right-handed alpha
Helix 8
AA8
A
162 165Right-handed 310
Helix 9
AA9
A
167 171Right-handed 310
Helix 10
AB1
A
175 187Right-handed alpha
Helix 11
AB2
A
194 205Right-handed alpha
Helix 12
AB3
A
209 221Right-handed alpha
Helix 13
AB4
A
230 241Right-handed alpha
Helix 14
AB5
A
242 244Right-handed 310
Helix 15
AB6
A
245 255Right-handed alpha
Helix 16
AB7
A
265 274Right-handed alpha
Helix 17
AB8
A
275 277Right-handed 310
Helix 18
AB9
A
315 326Right-handed alpha
Helix 19
AC1
B
42 62Right-handed alpha
Helix 20
AC2
B
63 66Right-handed 310
Helix 21
AC3
B
73 95Right-handed alpha
Helix 22
AC4
B
97 102Right-handed alpha
Helix 23
AC5
B
104 129Right-handed alpha
Helix 24
AC6
B
130 134Right-handed 310
Helix 25
AC7
B
137 161Right-handed alpha
Helix 26
AC8
B
162 165Right-handed 310
Helix 27
AC9
B
167 171Right-handed 310
Helix 28
AD1
B
175 187Right-handed alpha
Helix 29
AD2
B
194 202Right-handed alpha
Helix 30
AD3
B
209 221Right-handed alpha
Helix 31
AD4
B
230 241Right-handed alpha
Helix 32
AD5
B
242 244Right-handed 310
Helix 33
AD6
B
245 255Right-handed alpha
Helix 34
AD7
B
265 275Right-handed alpha
Helix 35
AD8
B
315 327Right-handed alpha
Helix 36
AD9
C
43 61Right-handed alpha
Helix 37
AE1
C
62 66Right-handed 310
Helix 38
AE2
C
73 89Right-handed alpha
Helix 39
AE3
C
97 102Right-handed alpha
Helix 40
AE4
C
104 129Right-handed alpha
Helix 41
AE5
C
130 134Right-handed 310
Helix 42
AE6
C
137 161Right-handed alpha
Helix 43
AE7
C
162 165Right-handed 310
Helix 44
AE8
C
167 171Right-handed 310
Helix 45
AE9
C
175 187Right-handed alpha
Helix 46
AF1
C
194 205Right-handed alpha
Helix 47
AF2
C
210 221Right-handed alpha
Helix 48
AF3
C
230 240Right-handed alpha
Helix 49
AF4
C
242 244Right-handed 310
Helix 50
AF5
C
245 255Right-handed alpha
Helix 51
AF6
C
265 275Right-handed alpha
Helix 52
AF7
C
315 326Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5AXI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
282 287parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
282 287parallel
Strand 3
A
331 332parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 309first strand
Strand 2
B
295 300anti-parallel
Strand 3
B
282 287anti-parallel
Strand 4
B
331 332parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 193first strand
Strand 2
C
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
260 263first strand
Strand 2
C
281 287parallel
Strand 3
C
296 300anti-parallel
Strand 4
C
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
260 263first strand
Strand 2
C
281 287parallel
Strand 3
C
329 332parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il