Analysis of interatomic Contacts of Structural Units in PDB entry:
5AXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AXL entry

There are 2 chains in PDB entry 5AXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ASN 241
B
 THR 3ASN 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5AXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
39 57Right-handed alpha
Helix 4
AA4
A
79 82Right-handed 310
Helix 5
AA5
A
83 103Right-handed alpha
Helix 6
AA6
A
119 121Right-handed 310
Helix 7
AA7
A
122 150Right-handed alpha
Helix 8
AA8
A
153 164Right-handed alpha
Helix 9
AA9
A
165 176Right-handed alpha
Helix 10
AB1
A
184 190Right-handed alpha
Helix 11
AB2
A
231 241Right-handed alpha
Helix 12
AB3
B
5 9Right-handed 310
Helix 13
AB4
B
24 31Right-handed alpha
Helix 14
AB5
B
39 57Right-handed alpha
Helix 15
AB6
B
78 82Right-handed 310
Helix 16
AB7
B
83 103Right-handed alpha
Helix 17
AB8
B
119 121Right-handed 310
Helix 18
AB9
B
122 150Right-handed alpha
Helix 19
AC1
B
153 164Right-handed alpha
Helix 20
AC2
B
165 176Right-handed alpha
Helix 21
AC3
B
179 183Right-handed 310
Helix 22
AC4
B
184 190Right-handed alpha
Helix 23
AC5
B
231 241Right-handed alpha
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There are 2 sheets in PDB entry 5AXL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 117first strand
Strand 2
A
16 22anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
63 67anti-parallel
Strand 5
A
191 196anti-parallel
Strand 6
A
217 221anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 117first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
63 67anti-parallel
Strand 5
B
191 196anti-parallel
Strand 6
B
217 221anti-parallel
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