Analysis of interatomic Contacts of Structural Units in PDB entry:
5AXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AXM entry

There are 3 chains in PDB entry 5AXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ASN 241
B
 THR 3ASN 241
P
 G 3 C 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5AXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 31Right-handed alpha
Helix 2
AA2
A
39 57Right-handed alpha
Helix 3
AA3
A
79 82Right-handed 310
Helix 4
AA4
A
83 104Right-handed alpha
Helix 5
AA5
A
119 121Right-handed 310
Helix 6
AA6
A
122 147Right-handed alpha
Helix 7
AA7
A
153 162Right-handed alpha
Helix 8
AA8
A
165 175Right-handed alpha
Helix 9
AA9
A
179 183Right-handed 310
Helix 10
AB1
A
184 189Right-handed alpha
Helix 11
AB2
A
235 241Right-handed alpha
Helix 12
AB3
B
24 29Right-handed alpha
Helix 13
AB4
B
39 57Right-handed alpha
Helix 14
AB5
B
79 82Right-handed 310
Helix 15
AB6
B
83 103Right-handed alpha
Helix 16
AB7
B
119 121Right-handed 310
Helix 17
AB8
B
122 151Right-handed alpha
Helix 18
AB9
B
153 164Right-handed alpha
Helix 19
AC1
B
165 176Right-handed alpha
Helix 20
AC2
B
179 183Right-handed 310
Helix 21
AC3
B
184 190Right-handed alpha
Helix 22
AC4
B
231 241Right-handed alpha
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There are 2 sheets in PDB entry 5AXM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
16 22anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
63 67anti-parallel
Strand 5
A
191 194anti-parallel
Strand 6
A
219 221anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 117first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
64 67anti-parallel
Strand 5
B
191 204anti-parallel
Strand 6
B
209 221anti-parallel
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