Analysis of interatomic Contacts of Structural Units in PDB entry:
5AY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AY6 entry

There are 2 chains in PDB entry 5AY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 167ASN 469
B
 LYS 167ASN 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5AY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
300 305Right-handed alpha
Helix 2
AA2
A
315 322Right-handed alpha
Helix 3
AA3
A
433 437Right-handed 310
Helix 4
AA4
B
300 305Right-handed alpha
Helix 5
AA5
B
315 322Right-handed alpha
Helix 6
AA6
B
433 437Right-handed 310
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There are 12 sheets in PDB entry 5AY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
441 446anti-parallel
Strand 3
A
170 176parallel
Strand 4
A
454 455parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
441 446anti-parallel
Strand 3
A
170 176parallel
Strand 4
A
462 468anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
209 217anti-parallel
Strand 3
A
228 237anti-parallel
Strand 4
A
240 250anti-parallel
Strand 5
A
256 259anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
209 217anti-parallel
Strand 3
A
228 237anti-parallel
Strand 4
A
240 250anti-parallel
Strand 5
A
262 263anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
284 286anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 338first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
359 366anti-parallel
Strand 4
A
378 386anti-parallel
Strand 5
A
392 394anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 409first strand
Strand 2
B
441 446anti-parallel
Strand 3
B
170 176parallel
Strand 4
B
454 455parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 409first strand
Strand 2
B
441 446anti-parallel
Strand 3
B
170 176parallel
Strand 4
B
462 468anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
209 217anti-parallel
Strand 3
B
228 237anti-parallel
Strand 4
B
240 250anti-parallel
Strand 5
B
256 259anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 203first strand
Strand 2
B
209 217anti-parallel
Strand 3
B
228 237anti-parallel
Strand 4
B
240 250anti-parallel
Strand 5
B
262 263anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 277first strand
Strand 2
B
284 286anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 338first strand
Strand 2
B
344 353anti-parallel
Strand 3
B
359 366anti-parallel
Strand 4
B
378 386anti-parallel
Strand 5
B
392 394anti-parallel
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