Analysis of interatomic Contacts of Structural Units in PDB entry:
5AY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AY7 entry

There are 2 chains in PDB entry 5AY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3ASP 332
B
 ALA 1ASP 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5AY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
25 36Right-handed alpha
Helix 4
AA4
A
46 51Right-handed alpha
Helix 5
AA5
A
59 72Right-handed alpha
Helix 6
AA6
A
88 92Right-handed 310
Helix 7
AA7
A
101 121Right-handed alpha
Helix 8
AA8
A
149 156Right-handed alpha
Helix 9
AA9
A
157 171Right-handed alpha
Helix 10
AB1
A
185 202Right-handed alpha
Helix 11
AB2
A
221 234Right-handed alpha
Helix 12
AB3
A
266 286Right-handed alpha
Helix 13
AB4
A
322 330Right-handed alpha
Helix 14
AB5
B
3 8Right-handed alpha
Helix 15
AB6
B
20 24Right-handed 310
Helix 16
AB7
B
25 36Right-handed alpha
Helix 17
AB8
B
46 51Right-handed alpha
Helix 18
AB9
B
59 72Right-handed alpha
Helix 19
AC1
B
88 92Right-handed 310
Helix 20
AC2
B
101 121Right-handed alpha
Helix 21
AC3
B
149 156Right-handed alpha
Helix 22
AC4
B
157 171Right-handed alpha
Helix 23
AC5
B
185 203Right-handed alpha
Helix 24
AC6
B
221 234Right-handed alpha
Helix 25
AC7
B
266 287Right-handed alpha
Helix 26
AC8
B
307 311Right-handed 310
Helix 27
AC9
B
322 330Right-handed alpha
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There are 2 sheets in PDB entry 5AY7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
238 247parallel
Strand 3
A
291 297parallel
Strand 4
A
13 18parallel
Strand 5
A
39 41parallel
Strand 6
A
76 78parallel
Strand 7
A
124 131parallel
Strand 8
A
175 180parallel
Strand 9
A
208 211parallel
Strand 10
A
238 247parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 216first strand
Strand 2
B
239 247parallel
Strand 3
B
291 296parallel
Strand 4
B
13 18parallel
Strand 5
B
38 41parallel
Strand 6
B
76 79parallel
Strand 7
B
124 131parallel
Strand 8
B
175 180parallel
Strand 9
B
208 211parallel
Strand 10
B
239 247parallel
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