Analysis of interatomic Contacts of Structural Units in PDB entry:
5AY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AY9 entry

There is 1 chain in PDB entry 5AY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5AY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
45 49Right-handed 310
Helix 3
AA3
A
308 313Right-handed 310
Helix 4
AA4
A
351 360Right-handed alpha
Helix 5
AA5
A
367 383Right-handed alpha
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There are 8 sheets in PDB entry 5AY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
347 350anti-parallel
Strand 3
A
332 339anti-parallel
Strand 4
A
320 327anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
347 350anti-parallel
Strand 3
A
332 339anti-parallel
Strand 4
A
343 344anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 77first strand
Strand 2
A
80 89anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
109 110anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 134first strand
Strand 2
A
140 149anti-parallel
Strand 3
A
158 167anti-parallel
Strand 4
A
174 175anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
232 233parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 196first strand
Strand 2
A
201 208anti-parallel
Strand 3
A
219 225anti-parallel
Strand 4
A
237 241anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
265 275anti-parallel
Strand 3
A
259 260anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
265 275anti-parallel
Strand 3
A
278 288anti-parallel
Strand 4
A
296 298anti-parallel
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