Analysis of interatomic Contacts of Structural Units in PDB entry:
5AYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AYJ entry

There are 3 chains in PDB entry 5AYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 7	GLN 310
B	VAL 8	PRO 314
C	VAL 8	ASP 66

There are 34 helices in PDB entry 5AYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	57	Right-handed 310
Helix 2	AA2	A	58	64	Right-handed alpha
Helix 3	AA3	A	72	87	Right-handed alpha
Helix 4	AA4	A	91	107	Right-handed alpha
Helix 5	AA5	A	215	221	Right-handed 310
Helix 6	AA6	A	223	227	Right-handed 310
Helix 7	AA7	A	229	244	Right-handed alpha
Helix 8	AA8	A	248	264	Right-handed alpha
Helix 9	AA9	B	55	57	Right-handed 310
Helix 10	AB1	B	58	64	Right-handed alpha
Helix 11	AB2	B	72	87	Right-handed alpha
Helix 12	AB3	B	91	107	Right-handed alpha
Helix 13	AB4	B	215	220	Right-handed 310
Helix 14	AB5	B	223	227	Right-handed 310
Helix 15	AB6	B	229	244	Right-handed alpha
Helix 16	AB7	B	248	264	Right-handed alpha
Helix 17	AB8	B	311	313	Right-handed 310
Helix 18	AB9	C	55	57	Right-handed 310
Helix 19	AC1	C	58	64	Right-handed alpha
Helix 20	AC2	C	72	87	Right-handed alpha
Helix 21	AC3	C	91	107	Right-handed alpha
Helix 22	AC4	C	215	220	Right-handed 310
Helix 23	AC5	C	223	227	Right-handed 310
Helix 24	AC6	C	229	244	Right-handed alpha
Helix 25	AC7	C	248	264	Right-handed alpha
Helix 26	AC8	C	309	313	Right-handed 310
Helix 27	AC9	D	55	57	Right-handed 310
Helix 28	AD1	D	58	64	Right-handed alpha
Helix 29	AD2	D	72	87	Right-handed alpha
Helix 30	AD3	D	91	107	Right-handed alpha
Helix 31	AD4	D	215	221	Right-handed 310
Helix 32	AD5	D	223	227	Right-handed 310
Helix 33	AD6	D	229	244	Right-handed alpha
Helix 34	AD7	D	248	264	Right-handed alpha

There are 8 sheets in PDB entry 5AYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	283	first strand
Strand 2	D	293	295	anti-parallel
Strand 3	A	9	21	anti-parallel
Strand 4	A	44	54	anti-parallel
Strand 5	A	112	119	anti-parallel
Strand 6	A	147	156	anti-parallel
Strand 7	A	162	178	anti-parallel
Strand 8	D	139	142	anti-parallel
Strand 9	D	122	124	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	139	142	anti-parallel
Strand 3	A	162	178	anti-parallel
Strand 4	A	204	213	anti-parallel
Strand 5	A	267	276	anti-parallel
Strand 6	A	301	309	anti-parallel
Strand 7	B	9	21	anti-parallel
Strand 8	C	293	295	anti-parallel
Strand 9	C	280	283	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	283	first strand
Strand 2	C	293	295	anti-parallel
Strand 3	B	9	21	anti-parallel
Strand 4	B	44	54	anti-parallel
Strand 5	B	112	119	anti-parallel
Strand 6	B	147	156	anti-parallel
Strand 7	B	162	178	anti-parallel
Strand 8	C	132	142	anti-parallel
Strand 9	C	122	129	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	129	first strand
Strand 2	C	132	142	anti-parallel
Strand 3	B	162	178	anti-parallel
Strand 4	B	204	213	anti-parallel
Strand 5	B	267	276	anti-parallel
Strand 6	B	301	309	anti-parallel
Strand 7	A	9	21	anti-parallel
Strand 8	D	293	295	anti-parallel
Strand 9	D	280	283	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	276	first strand
Strand 2	D	301	309	anti-parallel
Strand 3	A	122	127	first strand
Strand 4	A	134	142	anti-parallel
Strand 5	A	280	283	first strand
Strand 6	A	293	295	anti-parallel
Strand 7	B	122	129	first strand
Strand 8	D	204	213	first strand
Strand 9	D	162	178	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	178	first strand
Strand 2	D	204	213	anti-parallel
Strand 3	B	122	129	first strand
Strand 4	B	132	142	anti-parallel
Strand 5	B	280	283	first strand
Strand 6	B	293	295	anti-parallel
Strand 7	C	9	21	anti-parallel
Strand 8	D	147	156	first strand
Strand 9	D	112	120	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	120	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	C	9	21	first strand
Strand 4	C	44	54	anti-parallel
Strand 5	C	112	119	anti-parallel
Strand 6	C	147	156	anti-parallel
Strand 7	C	162	178	anti-parallel
Strand 8	D	44	54	first strand
Strand 9	D	9	21	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	21	first strand
Strand 2	D	44	54	anti-parallel
Strand 3	C	162	178	first strand
Strand 4	C	204	213	anti-parallel
Strand 5	C	267	276	anti-parallel
Strand 6	C	301	308	anti-parallel
Strand 7	A	122	127	first strand
Strand 8	D	301	309	first strand
Strand 9	D	267	276	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AYJ