Analysis of interatomic Contacts of Structural Units in PDB entry:
5AYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AYK entry

There is 1 chain in PDB entry 5AYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 34GLN 783
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5AYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 41Right-handed alpha
Helix 2
AA2
A
47 63Right-handed alpha
Helix 3
AA3
A
72 89Right-handed alpha
Helix 4
AA4
A
89 99Right-handed alpha
Helix 5
AA5
A
100 104Right-handed 310
Helix 6
AA6
A
114 121Right-handed alpha
Helix 7
AA7
A
135 144Right-handed alpha
Helix 8
AA8
A
158 175Right-handed alpha
Helix 9
AA9
A
189 196Right-handed alpha
Helix 10
AB1
A
221 231Right-handed alpha
Helix 11
AB2
A
241 256Right-handed alpha
Helix 12
AB3
A
272 283Right-handed alpha
Helix 13
AB4
A
297 302Right-handed alpha
Helix 14
AB5
A
335 347Right-handed alpha
Helix 15
AB6
A
354 362Right-handed alpha
Helix 16
AB7
A
381 385Right-handed 310
Helix 17
AB8
A
386 391Right-handed alpha
Helix 18
AB9
A
392 394Right-handed 310
Helix 19
AC1
A
406 413Right-handed alpha
Helix 20
AC2
A
439 452Right-handed alpha
Helix 21
AC3
A
459 463Right-handed 310
Helix 22
AC4
A
480 497Right-handed alpha
Helix 23
AC5
A
511 518Right-handed alpha
Helix 24
AC6
A
542 555Right-handed alpha
Helix 25
AC7
A
562 570Right-handed alpha
Helix 26
AC8
A
588 605Right-handed alpha
Helix 27
AC9
A
619 626Right-handed alpha
Helix 28
AD1
A
656 666Right-handed alpha
Helix 29
AD2
A
676 684Right-handed alpha
Helix 30
AD3
A
700 718Right-handed alpha
Helix 31
AD4
A
731 739Right-handed alpha
Helix 32
AD5
A
767 781Right-handed alpha
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There are 6 sheets in PDB entry 5AYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
180 185parallel
Strand 3
A
149 154parallel
Strand 4
A
203 207anti-parallel
Strand 5
A
214 216anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
287 293parallel
Strand 3
A
258 264parallel
Strand 4
A
310 314anti-parallel
Strand 5
A
329 331anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
396 402parallel
Strand 3
A
366 372parallel
Strand 4
A
419 423anti-parallel
Strand 5
A
431 433anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 457first strand
Strand 2
A
502 507parallel
Strand 3
A
471 476parallel
Strand 4
A
525 530anti-parallel
Strand 5
A
533 536anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 561first strand
Strand 2
A
610 615parallel
Strand 3
A
579 584parallel
Strand 4
A
633 637anti-parallel
Strand 5
A
648 649anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 674first strand
Strand 2
A
722 727parallel
Strand 3
A
691 696parallel
Strand 4
A
745 752anti-parallel
Strand 5
A
757 763anti-parallel
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