Analysis of interatomic Contacts of Structural Units in PDB entry:
5AYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AYP entry

There are 2 chains in PDB entry 5AYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ARG 295
B
 GLN 3ARG 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5AYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 27Right-handed alpha
Helix 2
AA2
A
31 43Right-handed alpha
Helix 3
AA3
A
48 61Right-handed alpha
Helix 4
AA4
A
64 67Right-handed 310
Helix 5
AA5
A
68 88Right-handed alpha
Helix 6
AA6
A
102 129Right-handed alpha
Helix 7
AA7
A
136 152Right-handed alpha
Helix 8
AA8
A
155 165Right-handed alpha
Helix 9
AA9
A
172 184Right-handed alpha
Helix 10
AB1
A
184 200Right-handed alpha
Helix 11
AB2
A
202 221Right-handed alpha
Helix 12
AB3
A
258 278Right-handed alpha
Helix 13
AB4
A
282 294Right-handed alpha
Helix 14
AB5
B
4 27Right-handed alpha
Helix 15
AB6
B
31 43Right-handed alpha
Helix 16
AB7
B
48 61Right-handed alpha
Helix 17
AB8
B
64 67Right-handed 310
Helix 18
AB9
B
68 87Right-handed alpha
Helix 19
AC1
B
102 129Right-handed alpha
Helix 20
AC2
B
136 152Right-handed alpha
Helix 21
AC3
B
155 165Right-handed alpha
Helix 22
AC4
B
172 184Right-handed alpha
Helix 23
AC5
B
184 199Right-handed alpha
Helix 24
AC6
B
202 227Right-handed alpha
Helix 25
AC7
B
251 256Right-handed alpha
Helix 26
AC8
B
256 278Right-handed alpha
Helix 27
AC9
B
282 293Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5AYP.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
100 101anti-parallel
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