Analysis of interatomic Contacts of Structural Units in PDB entry:
5AYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AYV entry

There are 2 chains in PDB entry 5AYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 300
B
 MET 1ARG 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5AYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
31 42Right-handed alpha
Helix 3
AA3
A
74 76Right-handed 310
Helix 4
AA4
A
77 86Right-handed alpha
Helix 5
AA5
A
87 89Right-handed 310
Helix 6
AA6
A
103 109Right-handed alpha
Helix 7
AA7
A
150 163Right-handed alpha
Helix 8
AA8
A
172 195Right-handed alpha
Helix 9
AA9
A
199 204Right-handed alpha
Helix 10
AB1
A
204 225Right-handed alpha
Helix 11
AB2
A
232 244Right-handed alpha
Helix 12
AB3
A
249 258Right-handed alpha
Helix 13
AB4
A
262 265Right-handed 310
Helix 14
AB5
A
266 277Right-handed alpha
Helix 15
AB6
A
281 300Right-handed alpha
Helix 16
AB7
B
9 22Right-handed alpha
Helix 17
AB8
B
31 42Right-handed alpha
Helix 18
AB9
B
74 76Right-handed 310
Helix 19
AC1
B
77 86Right-handed alpha
Helix 20
AC2
B
87 89Right-handed 310
Helix 21
AC3
B
103 109Right-handed alpha
Helix 22
AC4
B
150 163Right-handed alpha
Helix 23
AC5
B
172 195Right-handed alpha
Helix 24
AC6
B
199 204Right-handed alpha
Helix 25
AC7
B
204 225Right-handed alpha
Helix 26
AC8
B
232 244Right-handed alpha
Helix 27
AC9
B
249 257Right-handed alpha
Helix 28
AD1
B
262 265Right-handed 310
Helix 29
AD2
B
266 277Right-handed alpha
Helix 30
AD3
B
281 299Right-handed alpha
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There are 4 sheets in PDB entry 5AYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
68 71parallel
Strand 5
A
94 97parallel
Strand 6
A
115 120parallel
Strand 7
A
140 144anti-parallel
Strand 8
A
167 169parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
131 136parallel
Strand 4
A
123 128anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
25 29parallel
Strand 3
B
2 6parallel
Strand 4
B
68 71parallel
Strand 5
B
94 97parallel
Strand 6
B
115 120parallel
Strand 7
B
140 144anti-parallel
Strand 8
B
167 169parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
43 47anti-parallel
Strand 3
B
131 136parallel
Strand 4
B
123 128anti-parallel
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