Analysis of interatomic Contacts of Structural Units in PDB entry:
5B04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B04 entry

There are 10 chains in PDB entry 5B04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 17	LEU 341
B	PHE 17	LEU 341
C	GLY -5	LEU 393
D	GLY -5	LEU 393
E	GLN 31	MET 450
F	LEU 32	MET 450
G	ILE 114	PHE 462
H	ILE 114	PHE 462
I	LYS 15	ARG 442
J	HIS 16	GLY 443

There are147 helices in PDB entry 5B04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	34	47	Right-handed alpha
Helix 3	AA3	A	54	59	Right-handed alpha
Helix 4	AA4	A	62	73	Right-handed alpha
Helix 5	AA5	A	76	95	Right-handed alpha
Helix 6	AA6	A	100	110	Right-handed alpha
Helix 7	AA7	A	114	130	Right-handed alpha
Helix 8	AA8	A	131	133	Right-handed 310
Helix 9	AA9	A	145	158	Right-handed alpha
Helix 10	AB1	A	173	185	Right-handed alpha
Helix 11	AB2	A	197	204	Right-handed 310
Helix 12	AB3	A	225	236	Right-handed alpha
Helix 13	AB4	A	245	249	Right-handed 310
Helix 14	AB5	A	298	303	Right-handed alpha
Helix 15	AB6	A	312	316	Right-handed 310
Helix 16	AB7	A	330	340	Right-handed alpha
Helix 17	AB8	B	18	28	Right-handed alpha
Helix 18	AB9	B	34	49	Right-handed alpha
Helix 19	AC1	B	54	73	Right-handed alpha
Helix 20	AC2	B	76	97	Right-handed alpha
Helix 21	AC3	B	99	110	Right-handed alpha
Helix 22	AC4	B	110	130	Right-handed alpha
Helix 23	AC5	B	131	133	Right-handed 310
Helix 24	AC6	B	147	158	Right-handed alpha
Helix 25	AC7	B	173	184	Right-handed alpha
Helix 26	AC8	B	193	204	Right-handed 310
Helix 27	AC9	B	225	236	Right-handed alpha
Helix 28	AD1	B	245	249	Right-handed 310
Helix 29	AD2	B	298	303	Right-handed alpha
Helix 30	AD3	B	312	316	Right-handed 310
Helix 31	AD4	B	330	341	Right-handed alpha
Helix 32	AD5	C	-4	1	Right-handed alpha
Helix 33	AD6	C	3	8	Right-handed alpha
Helix 34	AD7	C	10	22	Right-handed alpha
Helix 35	AD8	C	27	46	Right-handed alpha
Helix 36	AD9	C	50	69	Right-handed alpha
Helix 37	AE1	C	72	97	Right-handed alpha
Helix 38	AE2	C	140	145	Right-handed 310
Helix 39	AE3	C	169	185	Right-handed alpha
Helix 40	AE4	C	186	192	Right-handed alpha
Helix 41	AE5	C	193	198	Right-handed 310
Helix 42	AE6	C	211	223	Right-handed alpha
Helix 43	AE7	C	238	252	Right-handed alpha
Helix 44	AE8	C	263	268	Right-handed alpha
Helix 45	AE9	C	269	271	Right-handed 310
Helix 46	AF1	C	292	303	Right-handed alpha
Helix 47	AF2	C	312	316	Right-handed 310
Helix 48	AF3	C	323	328	Right-handed alpha
Helix 49	AF4	C	332	336	Right-handed 310
Helix 50	AF5	C	341	347	Right-handed alpha
Helix 51	AF6	C	359	363	Right-handed 310
Helix 52	AF7	C	374	376	Right-handed 310
Helix 53	AF8	C	377	386	Right-handed alpha
Helix 54	AF9	C	387	392	Right-handed 310
Helix 55	AG1	D	2	10	Right-handed alpha
Helix 56	AG2	D	10	22	Right-handed alpha
Helix 57	AG3	D	27	46	Right-handed alpha
Helix 58	AG4	D	50	69	Right-handed alpha
Helix 59	AG5	D	73	95	Right-handed alpha
Helix 60	AG6	D	169	186	Right-handed alpha
Helix 61	AG7	D	186	193	Right-handed alpha
Helix 62	AG8	D	194	197	Right-handed 310
Helix 63	AG9	D	211	223	Right-handed alpha
Helix 64	AH1	D	238	252	Right-handed alpha
Helix 65	AH2	D	260	262	Right-handed 310
Helix 66	AH3	D	263	269	Right-handed alpha
Helix 67	AH4	D	292	303	Right-handed alpha
Helix 68	AH5	D	312	316	Right-handed 310
Helix 69	AH6	D	332	336	Right-handed 310
Helix 70	AH7	D	341	347	Right-handed alpha
Helix 71	AH8	D	359	363	Right-handed 310
Helix 72	AH9	D	374	376	Right-handed 310
Helix 73	AI1	D	377	384	Right-handed alpha
Helix 74	AI2	E	61	65	Right-handed 310
Helix 75	AI3	E	73	83	Right-handed alpha
Helix 76	AI4	E	96	106	Right-handed alpha
Helix 77	AI5	E	127	135	Right-handed alpha
Helix 78	AI6	E	136	139	Right-handed 310
Helix 79	AI7	E	155	167	Right-handed alpha
Helix 80	AI8	E	247	250	Right-handed 310
Helix 81	AI9	E	331	339	Right-handed alpha
Helix 82	AJ1	F	61	65	Right-handed 310
Helix 83	AJ2	F	73	83	Right-handed alpha
Helix 84	AJ3	F	96	106	Right-handed alpha
Helix 85	AJ4	F	127	135	Right-handed alpha
Helix 86	AJ5	F	136	139	Right-handed 310
Helix 87	AJ6	F	155	167	Right-handed alpha
Helix 88	AJ7	F	222	227	Right-handed alpha
Helix 89	AJ8	F	249	256	Right-handed alpha
Helix 90	AJ9	F	261	265	Right-handed 310
Helix 91	AK1	F	266	270	Right-handed 310
Helix 92	AK2	F	331	339	Right-handed alpha
Helix 93	AK3	G	142	155	Right-handed alpha
Helix 94	AK4	G	159	178	Right-handed alpha
Helix 95	AK5	G	185	205	Right-handed alpha
Helix 96	AK6	G	208	225	Right-handed alpha
Helix 97	AK7	G	230	249	Right-handed alpha
Helix 98	AK8	G	250	263	Right-handed alpha
Helix 99	AK9	G	277	290	Right-handed alpha
Helix 100	AL1	G	305	317	Right-handed alpha
Helix 101	AL2	G	328	334	Right-handed alpha
Helix 102	AL3	G	357	368	Right-handed alpha
Helix 103	AL4	G	377	381	Right-handed 310
Helix 104	AL5	G	397	402	Right-handed 310
Helix 105	AL6	G	436	440	Right-handed 310
Helix 106	AL7	G	451	453	Right-handed 310
Helix 107	AL8	G	454	462	Right-handed alpha
Helix 108	AL9	H	142	155	Right-handed alpha
Helix 109	AM1	H	159	178	Right-handed alpha
Helix 110	AM2	H	185	205	Right-handed alpha
Helix 111	AM3	H	208	224	Right-handed alpha
Helix 112	AM4	H	230	250	Right-handed alpha
Helix 113	AM5	H	250	263	Right-handed alpha
Helix 114	AM6	H	277	291	Right-handed alpha
Helix 115	AM7	H	305	317	Right-handed alpha
Helix 116	AM8	H	328	334	Right-handed alpha
Helix 117	AM9	H	357	368	Right-handed alpha
Helix 118	AN1	H	377	381	Right-handed 310
Helix 119	AN2	H	397	402	Right-handed 310
Helix 120	AN3	H	436	440	Right-handed 310
Helix 121	AN4	H	451	453	Right-handed 310
Helix 122	AN5	H	454	461	Right-handed alpha
Helix 123	AN6	I	39	43	Right-handed 310
Helix 124	AN7	I	49	62	Right-handed alpha
Helix 125	AN8	I	73	84	Right-handed alpha
Helix 126	AN9	I	85	88	Right-handed 310
Helix 127	AO1	I	107	116	Right-handed alpha
Helix 128	AO2	I	136	148	Right-handed alpha
Helix 129	AO3	I	203	210	Right-handed alpha
Helix 130	AO4	I	228	237	Right-handed alpha
Helix 131	AO5	I	246	253	Right-handed alpha
Helix 132	AO6	I	276	289	Right-handed alpha
Helix 133	AO7	I	290	293	Right-handed 310
Helix 134	AO8	I	296	300	Right-handed 310
Helix 135	AO9	J	39	43	Right-handed 310
Helix 136	AP1	J	49	62	Right-handed alpha
Helix 137	AP2	J	73	83	Right-handed alpha
Helix 138	AP3	J	84	88	Right-handed 310
Helix 139	AP4	J	105	117	Right-handed alpha
Helix 140	AP5	J	136	150	Right-handed alpha
Helix 141	AP6	J	202	208	Right-handed 310
Helix 142	AP7	J	228	236	Right-handed alpha
Helix 143	AP8	J	246	253	Right-handed alpha
Helix 144	AP9	J	276	289	Right-handed alpha
Helix 145	AQ1	J	290	293	Right-handed 310
Helix 146	AQ2	J	296	300	Right-handed 310
Helix 147	AQ3	J	310	312	Right-handed 310

There are 38 sheets in PDB entry 5B04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	A	162	167	parallel
Strand 3	A	137	142	parallel
Strand 4	A	206	210	parallel
Strand 5	A	240	243	parallel
Strand 6	A	318	321	parallel
Strand 7	A	324	326	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	220	223	anti-parallel
Strand 3	A	308	311	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	162	167	parallel
Strand 3	B	137	142	parallel
Strand 4	B	206	210	parallel
Strand 5	B	240	243	parallel
Strand 6	B	318	321	parallel
Strand 7	B	324	326	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	220	223	anti-parallel
Strand 3	B	308	311	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	373	first strand
Strand 2	C	365	368	anti-parallel
Strand 3	C	307	310	parallel
Strand 4	C	273	276	parallel
Strand 5	C	204	208	parallel
Strand 6	C	228	232	parallel
Strand 7	C	255	259	parallel
Strand 8	G	425	430	parallel
Strand 9	G	395	396	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	287	290	anti-parallel
Strand 3	C	355	358	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	331	first strand
Strand 2	C	352	353	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	350	first strand
Strand 2	G	320	325	parallel
Strand 3	G	294	300	parallel
Strand 4	G	269	274	parallel
Strand 5	G	338	342	parallel
Strand 6	G	372	375	parallel
Strand 7	G	442	445	parallel
Strand 8	G	448	450	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	373	first strand
Strand 2	D	365	367	anti-parallel
Strand 3	D	307	310	parallel
Strand 4	D	273	276	parallel
Strand 5	D	204	208	parallel
Strand 6	D	228	232	parallel
Strand 7	D	256	259	parallel
Strand 8	H	425	427	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	281	first strand
Strand 2	D	287	290	anti-parallel
Strand 3	D	355	358	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	350	first strand
Strand 2	H	321	325	parallel
Strand 3	H	295	300	parallel
Strand 4	H	270	274	parallel
Strand 5	H	338	342	parallel
Strand 6	H	372	375	parallel
Strand 7	H	442	445	parallel
Strand 8	H	448	450	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	117	first strand
Strand 2	E	87	92	parallel
Strand 3	E	39	45	parallel
Strand 4	E	142	147	parallel
Strand 5	E	237	245	anti-parallel
Strand 6	E	170	176	anti-parallel
Strand 7	E	315	319	parallel

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There are 13 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	207	first strand
Strand 2	E	196	199	anti-parallel
Strand 3	E	230	234	anti-parallel
Strand 4	J	211	215	anti-parallel
Strand 5	J	175	180	anti-parallel
Strand 6	J	185	191	anti-parallel
Strand 7	J	260	266	anti-parallel
Strand 8	J	153	161	parallel
Strand 9	J	218	226	anti-parallel
Strand 10	J	123	127	anti-parallel
Strand 11	J	19	23	parallel
Strand 12	J	65	70	parallel
Strand 13	J	94	99	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	221	first strand
Strand 2	J	198	201	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	356	358	first strand
Strand 2	E	373	375	parallel
Strand 3	E	390	392	parallel
Strand 4	E	407	409	parallel
Strand 5	E	424	426	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	367	368	first strand
Strand 2	E	384	385	parallel
Strand 3	E	401	402	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	378	379	first strand
Strand 2	E	395	396	parallel
Strand 3	E	412	413	parallel
Strand 4	E	429	430	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	117	first strand
Strand 2	F	87	91	parallel
Strand 3	F	39	44	parallel
Strand 4	F	142	147	parallel
Strand 5	F	237	245	anti-parallel
Strand 6	F	170	176	anti-parallel
Strand 7	F	315	318	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	152	first strand
Strand 2	F	324	325	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	205	207	first strand
Strand 2	F	196	198	anti-parallel
Strand 3	F	230	234	anti-parallel
Strand 4	I	212	215	anti-parallel
Strand 5	I	175	179	anti-parallel
Strand 6	I	186	191	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	221	first strand
Strand 2	I	198	200	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	357	358	first strand
Strand 2	F	373	375	parallel
Strand 3	F	390	392	parallel
Strand 4	F	407	409	parallel
Strand 5	F	424	426	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	362	first strand
Strand 2	F	378	381	parallel
Strand 3	F	395	398	parallel
Strand 4	F	412	413	parallel
Strand 5	F	429	430	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	368	369	first strand
Strand 2	F	385	386	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	420	first strand
Strand 2	F	436	437	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	345	346	first strand
Strand 2	G	352	355	anti-parallel
Strand 3	G	432	435	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	345	346	first strand
Strand 2	H	352	355	anti-parallel
Strand 3	H	432	435	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	395	396	first strand
Strand 2	H	429	430	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	99	first strand
Strand 2	I	65	70	parallel
Strand 3	I	19	23	parallel
Strand 4	I	123	127	parallel
Strand 5	I	218	226	anti-parallel
Strand 6	I	153	161	anti-parallel
Strand 7	I	260	266	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	132	first strand
Strand 2	I	271	273	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	307	309	first strand
Strand 2	I	313	315	anti-parallel
Strand 3	I	332	333	parallel
Strand 4	I	349	350	parallel
Strand 5	I	366	367	parallel
Strand 6	I	383	384	parallel
Strand 7	I	401	402	parallel
Strand 8	I	419	420	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	320	321	first strand
Strand 2	I	338	339	parallel
Strand 3	I	355	356	parallel
Strand 4	I	372	373	parallel
Strand 5	I	389	390	parallel
Strand 6	I	407	408	parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	326	327	first strand
Strand 2	I	344	346	parallel
Strand 3	I	361	363	parallel
Strand 4	I	378	380	parallel
Strand 5	I	395	396	parallel
Strand 6	I	413	414	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	129	132	first strand
Strand 2	J	271	274	anti-parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	307	309	first strand
Strand 2	J	313	315	anti-parallel
Strand 3	J	332	333	parallel
Strand 4	J	349	350	parallel
Strand 5	J	366	367	parallel
Strand 6	J	383	384	parallel
Strand 7	J	401	402	parallel
Strand 8	J	419	420	parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	320	321	first strand
Strand 2	J	338	339	parallel
Strand 3	J	355	356	parallel
Strand 4	J	372	373	parallel
Strand 5	J	389	390	parallel
Strand 6	J	407	408	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	326	327	first strand
Strand 2	J	344	346	parallel
Strand 3	J	361	363	parallel
Strand 4	J	378	380	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	395	396	first strand
Strand 2	J	413	414	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B04

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B04