Analysis of interatomic Contacts of Structural Units in PDB entry:
5B0O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B0O entry

There are 12 chains in PDB entry 5B0O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	THR 455
B	THR 2	VAL 456
C	THR 2	VAL 456
D	THR 2	THR 455
E	PRO 100	VAL 234
F	LEU 108	GLY 233
G	PRO 100	LEU 235
H	PRO 100	LEU 235
I	PRO 100	PRO 232
J	PRO 100	PRO 232
K	PRO 100	PRO 232
L	PRO 100	PRO 232

There are113 helices in PDB entry 5B0O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	20	Right-handed alpha
Helix 2	AA2	A	113	117	Right-handed 310
Helix 3	AA3	A	148	152	Right-handed 310
Helix 4	AA4	A	163	170	Right-handed alpha
Helix 5	AA5	A	187	199	Right-handed alpha
Helix 6	AA6	A	212	223	Right-handed alpha
Helix 7	AA7	A	224	230	Right-handed alpha
Helix 8	AA8	A	242	263	Right-handed alpha
Helix 9	AA9	A	273	288	Right-handed alpha
Helix 10	AB1	A	300	311	Right-handed alpha
Helix 11	AB2	A	337	347	Right-handed alpha
Helix 12	AB3	A	354	359	Right-handed alpha
Helix 13	AB4	A	375	380	Right-handed alpha
Helix 14	AB5	A	381	408	Right-handed alpha
Helix 15	AB6	A	415	433	Right-handed alpha
Helix 16	AB7	A	441	453	Right-handed alpha
Helix 17	AB8	B	3	19	Right-handed alpha
Helix 18	AB9	B	104	107	Right-handed 310
Helix 19	AC1	B	113	117	Right-handed 310
Helix 20	AC2	B	148	152	Right-handed 310
Helix 21	AC3	B	163	170	Right-handed alpha
Helix 22	AC4	B	187	199	Right-handed alpha
Helix 23	AC5	B	212	223	Right-handed alpha
Helix 24	AC6	B	224	231	Right-handed alpha
Helix 25	AC7	B	242	262	Right-handed alpha
Helix 26	AC8	B	273	288	Right-handed alpha
Helix 27	AC9	B	298	310	Right-handed alpha
Helix 28	AD1	B	337	347	Right-handed alpha
Helix 29	AD2	B	354	360	Right-handed alpha
Helix 30	AD3	B	375	380	Right-handed alpha
Helix 31	AD4	B	381	401	Right-handed alpha
Helix 32	AD5	B	402	407	Right-handed alpha
Helix 33	AD6	B	415	433	Right-handed alpha
Helix 34	AD7	B	441	451	Right-handed alpha
Helix 35	AD8	C	3	20	Right-handed alpha
Helix 36	AD9	C	113	117	Right-handed 310
Helix 37	AE1	C	163	171	Right-handed alpha
Helix 38	AE2	C	187	199	Right-handed alpha
Helix 39	AE3	C	212	223	Right-handed alpha
Helix 40	AE4	C	224	230	Right-handed alpha
Helix 41	AE5	C	242	263	Right-handed alpha
Helix 42	AE6	C	273	289	Right-handed alpha
Helix 43	AE7	C	298	311	Right-handed alpha
Helix 44	AE8	C	337	347	Right-handed alpha
Helix 45	AE9	C	354	360	Right-handed alpha
Helix 46	AF1	C	367	371	Right-handed 310
Helix 47	AF2	C	375	380	Right-handed alpha
Helix 48	AF3	C	381	401	Right-handed alpha
Helix 49	AF4	C	401	407	Right-handed alpha
Helix 50	AF5	C	415	433	Right-handed alpha
Helix 51	AF6	C	441	451	Right-handed alpha
Helix 52	AF7	D	3	21	Right-handed alpha
Helix 53	AF8	D	113	117	Right-handed 310
Helix 54	AF9	D	163	170	Right-handed alpha
Helix 55	AG1	D	187	199	Right-handed alpha
Helix 56	AG2	D	212	222	Right-handed alpha
Helix 57	AG3	D	224	231	Right-handed alpha
Helix 58	AG4	D	242	263	Right-handed alpha
Helix 59	AG5	D	273	288	Right-handed alpha
Helix 60	AG6	D	300	312	Right-handed alpha
Helix 61	AG7	D	337	347	Right-handed alpha
Helix 62	AG8	D	354	360	Right-handed alpha
Helix 63	AG9	D	375	380	Right-handed alpha
Helix 64	AH1	D	381	401	Right-handed alpha
Helix 65	AH2	D	401	408	Right-handed alpha
Helix 66	AH3	D	415	433	Right-handed alpha
Helix 67	AH4	D	441	453	Right-handed alpha
Helix 68	AH5	E	101	142	Right-handed alpha
Helix 69	AH6	E	147	159	Right-handed alpha
Helix 70	AH7	E	173	191	Right-handed alpha
Helix 71	AH8	E	218	231	Right-handed alpha
Helix 72	AH9	F	110	142	Right-handed alpha
Helix 73	AI1	F	147	160	Right-handed alpha
Helix 74	AI2	F	175	182	Right-handed alpha
Helix 75	AI3	F	184	192	Right-handed alpha
Helix 76	AI4	F	218	231	Right-handed alpha
Helix 77	AI5	G	103	142	Right-handed alpha
Helix 78	AI6	G	147	159	Right-handed alpha
Helix 79	AI7	G	173	175	Right-handed 310
Helix 80	AI8	G	176	192	Right-handed alpha
Helix 81	AI9	G	218	231	Right-handed alpha
Helix 82	AJ1	H	101	105	Right-handed alpha
Helix 83	AJ2	H	105	118	Right-handed alpha
Helix 84	AJ3	H	118	142	Right-handed alpha
Helix 85	AJ4	H	147	158	Right-handed alpha
Helix 86	AJ5	H	173	178	Right-handed alpha
Helix 87	AJ6	H	179	182	Right-handed 310
Helix 88	AJ7	H	186	191	Right-handed alpha
Helix 89	AJ8	H	218	231	Right-handed alpha
Helix 90	AJ9	I	101	123	Right-handed alpha
Helix 91	AK1	I	123	140	Right-handed alpha
Helix 92	AK2	I	146	160	Right-handed alpha
Helix 93	AK3	I	161	166	Right-handed alpha
Helix 94	AK4	I	173	191	Right-handed alpha
Helix 95	AK5	I	214	227	Right-handed alpha
Helix 96	AK6	J	101	140	Right-handed alpha
Helix 97	AK7	J	146	159	Right-handed alpha
Helix 98	AK8	J	161	166	Right-handed alpha
Helix 99	AK9	J	176	192	Right-handed alpha
Helix 100	AL1	J	214	227	Right-handed alpha
Helix 101	AL2	K	102	122	Right-handed alpha
Helix 102	AL3	K	122	140	Right-handed alpha
Helix 103	AL4	K	146	159	Right-handed alpha
Helix 104	AL5	K	161	166	Right-handed alpha
Helix 105	AL6	K	173	185	Right-handed alpha
Helix 106	AL7	K	185	192	Right-handed alpha
Helix 107	AL8	K	214	227	Right-handed alpha
Helix 108	AL9	L	104	140	Right-handed alpha
Helix 109	AM1	L	147	160	Right-handed alpha
Helix 110	AM2	L	161	166	Right-handed alpha
Helix 111	AM3	L	176	183	Right-handed alpha
Helix 112	AM4	L	183	191	Right-handed alpha
Helix 113	AM5	L	217	227	Right-handed alpha

There are 18 sheets in PDB entry 5B0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	197	first strand
Strand 2	E	169	172	parallel
Strand 3	E	207	209	anti-parallel
Strand 4	E	214	216	anti-parallel
Strand 5	A	26	34	anti-parallel
Strand 6	A	39	42	anti-parallel
Strand 7	A	76	81	anti-parallel
Strand 8	A	62	73	anti-parallel
Strand 9	A	51	57	anti-parallel
Strand 10	A	92	96	anti-parallel
Strand 11	A	26	34	anti-parallel
Strand 12	B	62	73	anti-parallel
Strand 13	B	51	57	anti-parallel
Strand 14	B	93	96	anti-parallel
Strand 15	B	26	33	anti-parallel
Strand 16	F	213	216	anti-parallel
Strand 17	F	207	209	anti-parallel
Strand 18	F	169	171	anti-parallel
Strand 19	F	194	195	parallel

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There are 19 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	197	first strand
Strand 2	E	169	172	parallel
Strand 3	E	207	209	anti-parallel
Strand 4	E	214	216	anti-parallel
Strand 5	A	26	34	anti-parallel
Strand 6	A	39	42	anti-parallel
Strand 7	A	76	81	anti-parallel
Strand 8	A	62	73	anti-parallel
Strand 9	A	51	57	anti-parallel
Strand 10	A	92	96	anti-parallel
Strand 11	A	26	34	anti-parallel
Strand 12	B	62	73	anti-parallel
Strand 13	B	76	81	anti-parallel
Strand 14	B	39	42	anti-parallel
Strand 15	B	26	33	anti-parallel
Strand 16	F	213	216	anti-parallel
Strand 17	F	207	209	anti-parallel
Strand 18	F	169	171	anti-parallel
Strand 19	F	194	195	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	139	141	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	232	237	parallel
Strand 3	A	203	209	parallel
Strand 4	A	266	272	parallel
Strand 5	A	321	329	parallel
Strand 6	A	313	314	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	232	237	parallel
Strand 3	A	203	209	parallel
Strand 4	A	266	272	parallel
Strand 5	A	321	329	parallel
Strand 6	A	177	182	parallel
Strand 7	A	350	352	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	112	first strand
Strand 2	B	138	141	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	232	237	parallel
Strand 3	B	203	209	parallel
Strand 4	B	266	272	parallel
Strand 5	B	321	329	parallel
Strand 6	B	177	182	parallel
Strand 7	B	349	352	parallel
Strand 8	B	372	373	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	197	first strand
Strand 2	G	169	172	parallel
Strand 3	G	207	209	anti-parallel
Strand 4	G	214	216	anti-parallel
Strand 5	C	26	33	anti-parallel
Strand 6	C	93	96	anti-parallel
Strand 7	C	51	57	anti-parallel
Strand 8	C	62	72	anti-parallel
Strand 9	C	77	81	anti-parallel
Strand 10	C	39	42	anti-parallel
Strand 11	C	26	33	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	139	141	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	232	237	parallel
Strand 3	C	203	209	parallel
Strand 4	C	266	272	parallel
Strand 5	C	321	329	parallel
Strand 6	C	177	182	parallel
Strand 7	C	349	353	parallel
Strand 8	C	372	373	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	172	173	anti-parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	196	first strand
Strand 2	H	169	171	parallel
Strand 3	H	207	209	anti-parallel
Strand 4	H	215	216	anti-parallel
Strand 5	D	26	33	anti-parallel
Strand 6	D	93	96	anti-parallel
Strand 7	D	51	58	anti-parallel
Strand 8	D	61	72	anti-parallel
Strand 9	D	77	81	anti-parallel
Strand 10	D	39	42	anti-parallel
Strand 11	D	26	33	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	112	first strand
Strand 2	D	138	141	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	232	237	parallel
Strand 3	D	203	209	parallel
Strand 4	D	266	272	parallel
Strand 5	D	321	329	parallel
Strand 6	D	177	182	parallel
Strand 7	D	349	353	parallel
Strand 8	D	366	373	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	194	197	first strand
Strand 2	I	168	172	parallel
Strand 3	I	206	210	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	195	197	first strand
Strand 2	J	169	172	parallel
Strand 3	J	207	209	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	194	197	first strand
Strand 2	K	168	172	parallel
Strand 3	K	206	210	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	195	197	first strand
Strand 2	L	169	172	parallel
Strand 3	L	206	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B0O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B0O