Analysis of interatomic Contacts of Structural Units in PDB entry:
5B0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B0V entry

There are 2 chains in PDB entry 5B0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 38VAL 303
B
 GLN 36SER 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5B0V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 52Right-handed 310
Helix 2
AA2
A
92 94Right-handed 310
Helix 3
AA3
A
95 106Right-handed alpha
Helix 4
AA4
A
135 141Right-handed alpha
Helix 5
AA5
A
148 150Right-handed 310
Helix 6
AA6
A
182 188Right-handed alpha
Helix 7
AA7
A
210 215Right-handed 310
Helix 8
AA8
A
222 230Right-handed alpha
Helix 9
AA9
A
231 235Right-handed 310
Helix 10
AB1
A
282 286Right-handed 310
Helix 11
AB2
A
297 301Right-handed 310
Helix 12
AB3
B
48 52Right-handed 310
Helix 13
AB4
B
92 94Right-handed 310
Helix 14
AB5
B
95 106Right-handed alpha
Helix 15
AB6
B
135 141Right-handed alpha
Helix 16
AB7
B
148 150Right-handed 310
Helix 17
AB8
B
152 156Right-handed 310
Helix 18
AB9
B
182 188Right-handed alpha
Helix 19
AC1
B
210 214Right-handed 310
Helix 20
AC2
B
222 230Right-handed alpha
Helix 21
AC3
B
231 235Right-handed 310
Helix 22
AC4
B
282 286Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5B0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
161 173parallel
Strand 3
A
58 70anti-parallel
Strand 4
A
77 90anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
142 146anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
290 295anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
246 250anti-parallel
Strand 3
A
272 276anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
160 173parallel
Strand 3
B
58 71anti-parallel
Strand 4
B
78 90anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 115first strand
Strand 2
B
118 125anti-parallel
Strand 3
B
142 146anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
191 196anti-parallel
Strand 3
B
290 295anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
246 250anti-parallel
Strand 3
B
272 276anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il