Analysis of interatomic Contacts of Structural Units in PDB entry:
5B16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B16 entry

There are 3 chains in PDB entry 5B16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 411ASN 1333
B
 MET 726ARG 750
C
 ALA 727THR 749
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5B16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
440 452Right-handed alpha
Helix 2
AA2
A
506 511Right-handed alpha
Helix 3
AA3
A
641 653Right-handed alpha
Helix 4
AA4
A
698 709Right-handed alpha
Helix 5
AA5
A
855 861Right-handed alpha
Helix 6
AA6
A
862 876Right-handed alpha
Helix 7
AA7
A
879 884Right-handed alpha
Helix 8
AA8
A
889 898Right-handed alpha
Helix 9
AA9
A
909 920Right-handed alpha
Helix 10
AB1
A
965 987Right-handed alpha
Helix 11
AB2
A
992 1005Right-handed alpha
Helix 12
AB3
A
1005 1014Right-handed alpha
Helix 13
AB4
A
1017 1022Right-handed alpha
Helix 14
AB5
A
1032 1055Right-handed alpha
Helix 15
AB6
A
1056 1069Right-handed alpha
Helix 16
AB7
A
1071 1080Right-handed alpha
Helix 17
AB8
A
1084 1089Right-handed alpha
Helix 18
AB9
A
1094 1099Right-handed alpha
Helix 19
AC1
A
1103 1115Right-handed alpha
Helix 20
AC2
A
1120 1128Right-handed alpha
Helix 21
AC3
A
1143 1165Right-handed alpha
Helix 22
AC4
A
1170 1182Right-handed alpha
Helix 23
AC5
A
1183 1195Right-handed alpha
Helix 24
AC6
A
1213 1232Right-handed alpha
Helix 25
AC7
A
1233 1245Right-handed alpha
Helix 26
AC8
A
1248 1255Right-handed alpha
Helix 27
AC9
A
1260 1270Right-handed alpha
Helix 28
AD1
A
1316 1331Right-handed alpha
Helix 29
AD2
B
727 750Right-handed alpha
Helix 30
AD3
C
728 746Right-handed alpha
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There are 6 sheets in PDB entry 5B16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 415first strand
Strand 2
A
694 696parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
436 437anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
598 608anti-parallel
Strand 3
A
572 579anti-parallel
Strand 4
A
626 632anti-parallel
Strand 5
A
618 621anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
598 608anti-parallel
Strand 3
A
679 686anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
740 743first strand
Strand 2
A
751 754anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1283 1290first strand
Strand 2
A
1297 1304anti-parallel
Strand 3
A
1307 1314anti-parallel
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