Analysis of interatomic Contacts of Structural Units in PDB entry:
5B19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B19 entry

There are 2 chains in PDB entry 5B19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LEU 232
B
 GLY 2LEU 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 5B19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 27Right-handed alpha
Helix 2
AA2
A
31 35Right-handed 310
Helix 3
AA3
A
48 55Right-handed alpha
Helix 4
AA4
A
60 73Right-handed alpha
Helix 5
AA5
A
84 93Right-handed 310
Helix 6
AA6
A
101 114Right-handed alpha
Helix 7
AA7
A
123 129Right-handed alpha
Helix 8
AA8
A
130 137Right-handed alpha
Helix 9
AA9
A
138 140Right-handed 310
Helix 10
AB1
A
147 160Right-handed alpha
Helix 11
AB2
A
162 178Right-handed alpha
Helix 12
AB3
A
190 195Right-handed alpha
Helix 13
AB4
A
196 201Right-handed alpha
Helix 14
AB5
A
207 219Right-handed alpha
Helix 15
AB6
A
224 231Right-handed 310
Helix 16
AB7
B
12 27Right-handed alpha
Helix 17
AB8
B
31 35Right-handed 310
Helix 18
AB9
B
49 57Right-handed alpha
Helix 19
AC1
B
60 74Right-handed alpha
Helix 20
AC2
B
85 93Right-handed 310
Helix 21
AC3
B
101 113Right-handed alpha
Helix 22
AC4
B
206 219Right-handed alpha
Helix 23
AC5
B
224 231Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 5B19. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
78 81parallel
Strand 3
A
5 9parallel
Strand 4
A
38 42parallel
Strand 5
B
38 42anti-parallel
Strand 6
B
5 9parallel
Strand 7
B
78 81parallel
Strand 8
B
98 99parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
117 121parallel
Strand 3
A
183 186parallel
Strand 4
A
204 206parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il