Analysis of interatomic Contacts of Structural Units in PDB entry:
5B1J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B1J entry

There are 3 chains in PDB entry 5B1J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	PRO 335
B	ASP 2	PRO 335
C	ALA 1	GLN 124

There are 15 helices in PDB entry 5B1J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	106	Right-handed 310
Helix 2	AA2	A	135	142	Right-handed alpha
Helix 3	AA3	A	192	205	Right-handed alpha
Helix 4	AA4	A	222	226	Right-handed 310
Helix 5	AA5	A	301	307	Right-handed alpha
Helix 6	AA6	B	2	6	Right-handed 310
Helix 7	AA7	B	98	107	Right-handed 310
Helix 8	AA8	B	135	142	Right-handed alpha
Helix 9	AA9	B	193	195	Right-handed 310
Helix 10	AB1	B	196	206	Right-handed alpha
Helix 11	AB2	B	222	226	Right-handed 310
Helix 12	AB3	B	301	307	Right-handed alpha
Helix 13	AB4	C	80	86	Right-handed 310
Helix 14	AB5	C	98	105	Right-handed alpha
Helix 15	AB6	C	109	121	Right-handed alpha

There are 14 sheets in PDB entry 5B1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	32	45	parallel
Strand 3	A	52	58	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	32	45	parallel
Strand 3	A	74	81	parallel
Strand 4	A	112	119	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	145	151	parallel
Strand 3	A	124	129	anti-parallel
Strand 4	A	92	93	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	163	164	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	214	first strand
Strand 2	A	168	177	anti-parallel
Strand 3	A	234	241	parallel
Strand 4	A	281	288	anti-parallel
Strand 5	A	255	259	anti-parallel
Strand 6	A	269	272	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	311	317	parallel
Strand 3	A	293	299	anti-parallel
Strand 4	A	248	250	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	32	45	parallel
Strand 3	B	52	58	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	32	45	parallel
Strand 3	B	74	81	parallel
Strand 4	B	112	119	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	70	first strand
Strand 2	B	145	151	parallel
Strand 3	B	124	129	anti-parallel
Strand 4	B	92	93	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	163	164	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	214	first strand
Strand 2	B	168	177	anti-parallel
Strand 3	B	234	241	parallel
Strand 4	B	281	288	anti-parallel
Strand 5	B	255	259	anti-parallel
Strand 6	B	269	272	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	311	317	parallel
Strand 3	B	293	299	anti-parallel
Strand 4	B	248	250	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	2	10	anti-parallel
Strand 3	C	31	35	parallel
Strand 4	C	65	68	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	88	93	parallel
Strand 3	C	74	78	anti-parallel
Strand 4	C	42	45	anti-parallel
Strand 5	C	58	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B1J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B1J