Analysis of interatomic Contacts of Structural Units in PDB entry:
5B1Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B1Q entry

There are 2 chains in PDB entry 5B1Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8ASN 455
B
 ASN 8ASN 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5B1Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
26 37Right-handed alpha
Helix 3
AA3
A
38 49Right-handed alpha
Helix 4
AA4
A
55 63Right-handed alpha
Helix 5
AA5
A
68 73Right-handed 310
Helix 6
AA6
A
74 107Right-handed alpha
Helix 7
AA7
A
108 110Right-handed 310
Helix 8
AA8
A
111 126Right-handed alpha
Helix 9
AA9
A
133 138Right-handed alpha
Helix 10
AB1
A
139 142Right-handed 310
Helix 11
AB2
A
148 161Right-handed alpha
Helix 12
AB3
A
162 165Right-handed 310
Helix 13
AB4
A
173 178Right-handed alpha
Helix 14
AB5
A
179 183Right-handed 310
Helix 15
AB6
A
195 212Right-handed alpha
Helix 16
AB7
A
219 223Right-handed 310
Helix 17
AB8
A
227 278Right-handed alpha
Helix 18
AB9
A
281 298Right-handed alpha
Helix 19
AC1
A
304 326Right-handed alpha
Helix 20
AC2
A
330 348Right-handed alpha
Helix 21
AC3
A
353 359Right-handed alpha
Helix 22
AC4
A
363 367Right-handed 310
Helix 23
AC5
A
374 378Right-handed 310
Helix 24
AC6
A
384 388Right-handed 310
Helix 25
AC7
A
395 399Right-handed 310
Helix 26
AC8
A
431 443Right-handed alpha
Helix 27
AC9
A
446 452Right-handed alpha
Helix 28
AD1
B
10 14Right-handed 310
Helix 29
AD2
B
26 37Right-handed alpha
Helix 30
AD3
B
38 49Right-handed alpha
Helix 31
AD4
B
55 63Right-handed alpha
Helix 32
AD5
B
68 73Right-handed 310
Helix 33
AD6
B
74 107Right-handed alpha
Helix 34
AD7
B
108 110Right-handed 310
Helix 35
AD8
B
111 126Right-handed alpha
Helix 36
AD9
B
133 138Right-handed alpha
Helix 37
AE1
B
148 161Right-handed alpha
Helix 38
AE2
B
162 165Right-handed 310
Helix 39
AE3
B
173 179Right-handed alpha
Helix 40
AE4
B
180 183Right-handed 310
Helix 41
AE5
B
195 212Right-handed alpha
Helix 42
AE6
B
227 278Right-handed alpha
Helix 43
AE7
B
281 298Right-handed alpha
Helix 44
AE8
B
304 326Right-handed alpha
Helix 45
AE9
B
330 348Right-handed alpha
Helix 46
AF1
B
353 359Right-handed alpha
Helix 47
AF2
B
363 367Right-handed 310
Helix 48
AF3
B
374 378Right-handed 310
Helix 49
AF4
B
384 388Right-handed 310
Helix 50
AF5
B
431 444Right-handed alpha
Helix 51
AF6
B
446 452Right-handed alpha
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There are 2 sheets in PDB entry 5B1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 417first strand
Strand 2
A
420 427anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 417first strand
Strand 2
B
420 428anti-parallel
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