Analysis of interatomic Contacts of Structural Units in PDB entry:
5B1S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B1S entry

There are 4 chains in PDB entry 5B1S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 294
B	MET 1	ASN 294
C	MET 1	ASN 294
D	MET 1	ASN 294

There are 59 helices in PDB entry 5B1S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	5	Right-handed 310
Helix 2	AA2	A	70	83	Right-handed alpha
Helix 3	AA3	A	99	106	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	A	131	136	Right-handed alpha
Helix 6	AA6	A	149	157	Right-handed alpha
Helix 7	AA7	A	176	180	Right-handed 310
Helix 8	AA8	A	181	191	Right-handed alpha
Helix 9	AA9	A	208	223	Right-handed alpha
Helix 10	AB1	A	237	239	Right-handed 310
Helix 11	AB2	A	261	265	Right-handed 310
Helix 12	AB3	A	267	271	Right-handed 310
Helix 13	AB4	A	275	283	Right-handed alpha
Helix 14	AB5	A	286	293	Right-handed 310
Helix 15	AB6	B	3	5	Right-handed 310
Helix 16	AB7	B	70	83	Right-handed alpha
Helix 17	AB8	B	99	107	Right-handed alpha
Helix 18	AB9	B	120	131	Right-handed alpha
Helix 19	AC1	B	131	136	Right-handed alpha
Helix 20	AC2	B	137	140	Right-handed 310
Helix 21	AC3	B	149	156	Right-handed alpha
Helix 22	AC4	B	176	180	Right-handed 310
Helix 23	AC5	B	181	191	Right-handed alpha
Helix 24	AC6	B	208	223	Right-handed alpha
Helix 25	AC7	B	237	239	Right-handed 310
Helix 26	AC8	B	261	265	Right-handed 310
Helix 27	AC9	B	267	271	Right-handed 310
Helix 28	AD1	B	275	282	Right-handed alpha
Helix 29	AD2	B	286	293	Right-handed 310
Helix 30	AD3	C	3	5	Right-handed 310
Helix 31	AD4	C	70	83	Right-handed alpha
Helix 32	AD5	C	99	107	Right-handed alpha
Helix 33	AD6	C	120	131	Right-handed alpha
Helix 34	AD7	C	131	136	Right-handed alpha
Helix 35	AD8	C	137	140	Right-handed 310
Helix 36	AD9	C	149	157	Right-handed alpha
Helix 37	AE1	C	176	180	Right-handed 310
Helix 38	AE2	C	181	191	Right-handed alpha
Helix 39	AE3	C	208	223	Right-handed alpha
Helix 40	AE4	C	237	239	Right-handed 310
Helix 41	AE5	C	261	265	Right-handed 310
Helix 42	AE6	C	267	271	Right-handed 310
Helix 43	AE7	C	275	283	Right-handed alpha
Helix 44	AE8	C	286	293	Right-handed 310
Helix 45	AE9	D	3	5	Right-handed 310
Helix 46	AF1	D	70	83	Right-handed alpha
Helix 47	AF2	D	99	106	Right-handed alpha
Helix 48	AF3	D	120	131	Right-handed alpha
Helix 49	AF4	D	131	136	Right-handed alpha
Helix 50	AF5	D	137	140	Right-handed 310
Helix 51	AF6	D	149	156	Right-handed alpha
Helix 52	AF7	D	176	180	Right-handed 310
Helix 53	AF8	D	181	191	Right-handed alpha
Helix 54	AF9	D	208	223	Right-handed alpha
Helix 55	AG1	D	237	239	Right-handed 310
Helix 56	AG2	D	261	265	Right-handed 310
Helix 57	AG3	D	267	271	Right-handed 310
Helix 58	AG4	D	275	283	Right-handed alpha
Helix 59	AG5	D	286	293	Right-handed 310

There are 8 sheets in PDB entry 5B1S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	11	13	anti-parallel
Strand 3	A	22	36	anti-parallel
Strand 4	B	22	36	anti-parallel
Strand 5	B	11	13	anti-parallel
Strand 6	B	7	8	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	66	first strand
Strand 2	A	55	59	anti-parallel
Strand 3	A	41	47	anti-parallel
Strand 4	A	22	36	anti-parallel
Strand 5	B	22	36	anti-parallel
Strand 6	B	41	47	anti-parallel
Strand 7	B	55	59	anti-parallel
Strand 8	B	62	66	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	147	first strand
Strand 2	A	113	118	parallel
Strand 3	A	90	95	parallel
Strand 4	A	162	168	parallel
Strand 5	A	192	200	parallel
Strand 6	A	241	248	anti-parallel
Strand 7	A	226	233	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	147	first strand
Strand 2	B	113	118	parallel
Strand 3	B	90	95	parallel
Strand 4	B	162	168	parallel
Strand 5	B	192	200	parallel
Strand 6	B	241	248	anti-parallel
Strand 7	B	226	233	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	11	13	anti-parallel
Strand 3	C	22	36	anti-parallel
Strand 4	D	22	36	anti-parallel
Strand 5	D	11	13	anti-parallel
Strand 6	D	7	8	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	66	first strand
Strand 2	C	55	59	anti-parallel
Strand 3	C	41	47	anti-parallel
Strand 4	C	22	36	anti-parallel
Strand 5	D	22	36	anti-parallel
Strand 6	D	41	47	anti-parallel
Strand 7	D	55	59	anti-parallel
Strand 8	D	62	66	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	147	first strand
Strand 2	C	113	118	parallel
Strand 3	C	90	95	parallel
Strand 4	C	162	168	parallel
Strand 5	C	192	200	parallel
Strand 6	C	241	248	anti-parallel
Strand 7	C	226	233	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	147	first strand
Strand 2	D	113	118	parallel
Strand 3	D	90	95	parallel
Strand 4	D	162	168	parallel
Strand 5	D	192	200	parallel
Strand 6	D	241	248	anti-parallel
Strand 7	D	226	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B1S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B1S