Analysis of interatomic Contacts of Structural Units in PDB entry:
5B1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B1Y entry

There are 2 chains in PDB entry 5B1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 250
B
 MET 1THR 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5B1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
37 52Right-handed alpha
Helix 3
AA3
A
65 80Right-handed alpha
Helix 4
AA4
A
102 114Right-handed alpha
Helix 5
AA5
A
114 131Right-handed alpha
Helix 6
AA6
A
141 145Right-handed 310
Helix 7
AA7
A
152 174Right-handed alpha
Helix 8
AA8
A
217 230Right-handed alpha
Helix 9
AA9
A
230 235Right-handed alpha
Helix 10
AB1
B
13 26Right-handed alpha
Helix 11
AB2
B
37 52Right-handed alpha
Helix 12
AB3
B
65 80Right-handed alpha
Helix 13
AB4
B
102 114Right-handed alpha
Helix 14
AB5
B
114 131Right-handed alpha
Helix 15
AB6
B
141 145Right-handed 310
Helix 16
AB7
B
152 174Right-handed alpha
Helix 17
AB8
B
192 196Right-handed 310
Helix 18
AB9
B
217 230Right-handed alpha
Helix 19
AC1
B
230 235Right-handed alpha
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There are 2 sheets in PDB entry 5B1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
29 34parallel
Strand 3
A
5 9parallel
Strand 4
A
85 88parallel
Strand 5
A
134 139parallel
Strand 6
A
178 185parallel
Strand 7
A
241 244parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
29 34parallel
Strand 3
B
5 9parallel
Strand 4
B
85 88parallel
Strand 5
B
134 139parallel
Strand 6
B
178 185parallel
Strand 7
B
241 244parallel
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