Analysis of interatomic Contacts of Structural Units in PDB entry:
5B2D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B2D entry

There are 2 chains in PDB entry 5B2D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 133	THR 582
B	PRO 133	THR 582

There are 14 helices in PDB entry 5B2D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	137	142	Right-handed alpha
Helix 2	AA2	A	263	270	Right-handed alpha
Helix 3	AA3	A	330	336	Right-handed alpha
Helix 4	AA4	A	353	364	Right-handed alpha
Helix 5	AA5	A	365	366	Right-handed 310
Helix 6	AA6	A	367	371	Right-handed 310
Helix 7	AA7	A	462	466	Right-handed 310
Helix 8	AA8	B	137	142	Right-handed alpha
Helix 9	AA9	B	263	270	Right-handed alpha
Helix 10	AB1	B	330	336	Right-handed alpha
Helix 11	AB2	B	353	364	Right-handed alpha
Helix 12	AB3	B	365	366	Right-handed 310
Helix 13	AB4	B	367	371	Right-handed 310
Helix 14	AB5	B	462	466	Right-handed 310

There are 14 sheets in PDB entry 5B2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	571	581	anti-parallel
Strand 3	A	554	562	anti-parallel
Strand 4	A	538	547	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	186	first strand
Strand 2	A	191	198	anti-parallel
Strand 3	A	209	219	anti-parallel
Strand 4	A	225	235	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	249	first strand
Strand 2	A	252	259	anti-parallel
Strand 3	A	275	282	anti-parallel
Strand 4	A	287	292	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	306	first strand
Strand 2	A	317	326	anti-parallel
Strand 3	A	312	314	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	306	first strand
Strand 2	A	317	326	anti-parallel
Strand 3	A	374	383	anti-parallel
Strand 4	A	393	395	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	413	first strand
Strand 2	A	416	421	anti-parallel
Strand 3	A	431	438	anti-parallel
Strand 4	A	446	451	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	485	first strand
Strand 2	A	501	506	anti-parallel
Strand 3	A	515	520	anti-parallel
Strand 4	A	525	530	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	571	582	anti-parallel
Strand 3	B	554	562	anti-parallel
Strand 4	B	538	547	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	186	first strand
Strand 2	B	191	198	anti-parallel
Strand 3	B	209	219	anti-parallel
Strand 4	B	225	235	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	249	first strand
Strand 2	B	252	259	anti-parallel
Strand 3	B	275	282	anti-parallel
Strand 4	B	287	292	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	306	first strand
Strand 2	B	317	326	anti-parallel
Strand 3	B	312	314	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	306	first strand
Strand 2	B	317	326	anti-parallel
Strand 3	B	374	383	anti-parallel
Strand 4	B	393	395	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	413	first strand
Strand 2	B	416	421	anti-parallel
Strand 3	B	431	438	anti-parallel
Strand 4	B	446	451	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	485	first strand
Strand 2	B	501	506	anti-parallel
Strand 3	B	515	520	anti-parallel
Strand 4	B	525	530	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B2D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B2D