Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B3G entry

There are 2 chains in PDB entry 5B3G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 282ARG 652
B
 ASP 121THR 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 5B3G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
282 303Right-handed alpha
Helix 2
AA2
A
305 320Right-handed alpha
Helix 3
AA3
A
325 348Right-handed alpha
Helix 4
AA4
A
354 358Right-handed 310
Helix 5
AA5
A
359 377Right-handed alpha
Helix 6
AA6
A
378 395Right-handed alpha
Helix 7
AA7
A
413 423Right-handed alpha
Helix 8
AA8
A
439 458Right-handed alpha
Helix 9
AA9
A
469 473Right-handed 310
Helix 10
AB1
A
474 479Right-handed alpha
Helix 11
AB2
A
501 513Right-handed alpha
Helix 12
AB3
A
529 552Right-handed alpha
Helix 13
AB4
A
556 566Right-handed alpha
Helix 14
AB5
A
566 576Right-handed alpha
Helix 15
AB6
A
590 598Right-handed alpha
Helix 16
AB7
A
607 618Right-handed alpha
Helix 17
AB8
B
121 126Right-handed 310
Helix 18
AB9
B
141 157Right-handed alpha
Helix 19
AC1
B
158 173Right-handed alpha
Helix 20
AC2
B
178 196Right-handed alpha
Helix 21
AC3
B
198 211Right-handed alpha
Helix 22
AC4
B
215 232Right-handed alpha
Helix 23
AC5
B
233 235Right-handed 310
Helix 24
AC6
B
236 251Right-handed alpha
Helix 25
AC7
B
269 280Right-handed alpha
Helix 26
AC8
B
300 323Right-handed alpha
Helix 27
AC9
B
336 340Right-handed 310
Helix 28
AD1
B
341 345Right-handed 310
Helix 29
AD2
B
360 364Right-handed 310
Helix 30
AD3
B
369 381Right-handed alpha
Helix 31
AD4
B
404 429Right-handed alpha
Helix 32
AD5
B
433 453Right-handed alpha
Helix 33
AD6
B
454 458Right-handed 310
Helix 34
AD7
B
464 475Right-handed alpha
Helix 35
AD8
B
483 495Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5B3G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 466first strand
Strand 2
A
430 436parallel
Strand 3
A
400 405parallel
Strand 4
A
485 491parallel
Strand 5
A
516 522parallel
Strand 6
A
641 651anti-parallel
Strand 7
A
600 603anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 466first strand
Strand 2
A
430 436parallel
Strand 3
A
400 405parallel
Strand 4
A
485 491parallel
Strand 5
A
516 522parallel
Strand 6
A
641 651anti-parallel
Strand 7
A
633 638anti-parallel
Strand 8
A
625 630anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 334first strand
Strand 2
B
285 294parallel
Strand 3
B
255 261parallel
Strand 4
B
352 358parallel
Strand 5
B
385 391parallel
Strand 6
B
520 530anti-parallel
Strand 7
B
477 479anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 334first strand
Strand 2
B
285 294parallel
Strand 3
B
255 261parallel
Strand 4
B
352 358parallel
Strand 5
B
385 391parallel
Strand 6
B
520 530anti-parallel
Strand 7
B
513 517anti-parallel
Strand 8
B
502 506anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il