Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B3H entry

There are 6 chains in PDB entry 5B3H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 284	SER 653
B	PRO 122	THR 531
D	GLN 283	SER 653
E	ASP 121	THR 531
C	LYS 158	THR 211
F	LYS 158	LEU 210

There are 71 helices in PDB entry 5B3H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	284	303	Right-handed alpha
Helix 2	AA2	A	305	320	Right-handed alpha
Helix 3	AA3	A	325	348	Right-handed alpha
Helix 4	AA4	A	354	358	Right-handed 310
Helix 5	AA5	A	359	377	Right-handed alpha
Helix 6	AA6	A	378	395	Right-handed alpha
Helix 7	AA7	A	413	424	Right-handed alpha
Helix 8	AA8	A	439	458	Right-handed alpha
Helix 9	AA9	A	469	473	Right-handed 310
Helix 10	AB1	A	474	479	Right-handed alpha
Helix 11	AB2	A	501	513	Right-handed alpha
Helix 12	AB3	A	529	552	Right-handed alpha
Helix 13	AB4	A	556	566	Right-handed alpha
Helix 14	AB5	A	566	576	Right-handed alpha
Helix 15	AB6	A	590	598	Right-handed alpha
Helix 16	AB7	A	607	618	Right-handed alpha
Helix 17	AB8	B	141	157	Right-handed alpha
Helix 18	AB9	B	158	173	Right-handed alpha
Helix 19	AC1	B	178	196	Right-handed alpha
Helix 20	AC2	B	198	211	Right-handed alpha
Helix 21	AC3	B	212	216	Right-handed 310
Helix 22	AC4	B	217	232	Right-handed alpha
Helix 23	AC5	B	233	250	Right-handed alpha
Helix 24	AC6	B	268	280	Right-handed alpha
Helix 25	AC7	B	302	323	Right-handed alpha
Helix 26	AC8	B	336	340	Right-handed 310
Helix 27	AC9	B	360	364	Right-handed 310
Helix 28	AD1	B	369	381	Right-handed alpha
Helix 29	AD2	B	403	429	Right-handed alpha
Helix 30	AD3	B	433	453	Right-handed alpha
Helix 31	AD4	B	454	458	Right-handed 310
Helix 32	AD5	B	464	474	Right-handed alpha
Helix 33	AD6	B	483	495	Right-handed alpha
Helix 34	AD7	D	285	303	Right-handed alpha
Helix 35	AD8	D	305	320	Right-handed alpha
Helix 36	AD9	D	325	348	Right-handed alpha
Helix 37	AE1	D	354	358	Right-handed 310
Helix 38	AE2	D	359	377	Right-handed alpha
Helix 39	AE3	D	378	395	Right-handed alpha
Helix 40	AE4	D	413	423	Right-handed alpha
Helix 41	AE5	D	439	458	Right-handed alpha
Helix 42	AE6	D	469	473	Right-handed 310
Helix 43	AE7	D	474	479	Right-handed alpha
Helix 44	AE8	D	501	513	Right-handed alpha
Helix 45	AE9	D	529	552	Right-handed alpha
Helix 46	AF1	D	556	566	Right-handed alpha
Helix 47	AF2	D	566	576	Right-handed alpha
Helix 48	AF3	D	590	598	Right-handed alpha
Helix 49	AF4	D	607	619	Right-handed alpha
Helix 50	AF5	E	121	126	Right-handed 310
Helix 51	AF6	E	141	157	Right-handed alpha
Helix 52	AF7	E	158	173	Right-handed alpha
Helix 53	AF8	E	178	196	Right-handed alpha
Helix 54	AF9	E	198	210	Right-handed alpha
Helix 55	AG1	E	218	232	Right-handed alpha
Helix 56	AG2	E	233	250	Right-handed alpha
Helix 57	AG3	E	269	280	Right-handed alpha
Helix 58	AG4	E	303	321	Right-handed alpha
Helix 59	AG5	E	336	340	Right-handed 310
Helix 60	AG6	E	341	346	Right-handed 310
Helix 61	AG7	E	360	364	Right-handed 310
Helix 62	AG8	E	369	381	Right-handed alpha
Helix 63	AG9	E	404	429	Right-handed alpha
Helix 64	AH1	E	433	453	Right-handed alpha
Helix 65	AH2	E	454	458	Right-handed 310
Helix 66	AH3	E	464	474	Right-handed alpha
Helix 67	AH4	E	483	495	Right-handed alpha
Helix 68	AH5	C	170	181	Right-handed alpha
Helix 69	AH6	C	196	207	Right-handed alpha
Helix 70	AH7	F	170	181	Right-handed alpha
Helix 71	AH8	F	196	207	Right-handed alpha

There are 11 sheets in PDB entry 5B3H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	466	first strand
Strand 2	A	430	436	parallel
Strand 3	A	400	405	parallel
Strand 4	A	485	491	parallel
Strand 5	A	516	522	parallel
Strand 6	A	641	651	anti-parallel
Strand 7	A	600	603	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	466	first strand
Strand 2	A	430	436	parallel
Strand 3	A	400	405	parallel
Strand 4	A	485	491	parallel
Strand 5	A	516	522	parallel
Strand 6	A	641	651	anti-parallel
Strand 7	A	633	638	anti-parallel
Strand 8	A	625	630	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	334	first strand
Strand 2	B	285	294	parallel
Strand 3	B	255	261	parallel
Strand 4	B	352	358	parallel
Strand 5	B	385	391	parallel
Strand 6	B	520	530	anti-parallel
Strand 7	B	477	479	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	334	first strand
Strand 2	B	285	294	parallel
Strand 3	B	255	261	parallel
Strand 4	B	352	358	parallel
Strand 5	B	385	391	parallel
Strand 6	B	520	530	anti-parallel
Strand 7	B	513	517	anti-parallel
Strand 8	B	502	506	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	466	first strand
Strand 2	D	430	436	parallel
Strand 3	D	400	405	parallel
Strand 4	D	485	491	parallel
Strand 5	D	516	522	parallel
Strand 6	D	641	651	anti-parallel
Strand 7	D	600	603	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	466	first strand
Strand 2	D	430	436	parallel
Strand 3	D	400	405	parallel
Strand 4	D	485	491	parallel
Strand 5	D	516	522	parallel
Strand 6	D	641	651	anti-parallel
Strand 7	D	633	638	anti-parallel
Strand 8	D	625	630	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	326	334	first strand
Strand 2	E	285	294	parallel
Strand 3	E	255	261	parallel
Strand 4	E	352	358	parallel
Strand 5	E	385	391	parallel
Strand 6	E	521	530	anti-parallel
Strand 7	E	477	479	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	326	334	first strand
Strand 2	E	285	294	parallel
Strand 3	E	255	261	parallel
Strand 4	E	352	358	parallel
Strand 5	E	385	391	parallel
Strand 6	E	521	530	anti-parallel
Strand 7	E	513	517	anti-parallel
Strand 8	E	502	506	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	167	168	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	193	194	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	160	first strand
Strand 2	F	167	168	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B3H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3H