Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B3L entry

There is 1 chain in PDB entry 5B3L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5B3L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 28Right-handed alpha
Helix 2
AA2
A
39 47Right-handed alpha
Helix 3
AA3
A
67 78Right-handed alpha
Helix 4
AA4
A
101 115Right-handed alpha
Helix 5
AA5
A
132 137Right-handed alpha
Helix 6
AA6
A
137 150Right-handed alpha
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There are 2 sheets in PDB entry 5B3L. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
2 8parallel
Strand 3
A
50 55parallel
Strand 4
A
85 92parallel
Strand 5
A
117 118parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
2 8parallel
Strand 3
A
50 55parallel
Strand 4
A
85 92parallel
Strand 5
A
123 126parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il