Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B3W entry

There are 2 chains in PDB entry 5B3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 380
B
 MET 1ASN 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 5B3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
31 47Right-handed alpha
Helix 3
AA3
A
57 66Right-handed alpha
Helix 4
AA4
A
81 88Right-handed alpha
Helix 5
AA5
A
97 102Right-handed alpha
Helix 6
AA6
A
105 111Right-handed alpha
Helix 7
AA7
A
146 156Right-handed alpha
Helix 8
AA8
A
168 179Right-handed alpha
Helix 9
AA9
A
200 216Right-handed alpha
Helix 10
AB1
A
224 234Right-handed alpha
Helix 11
AB2
A
243 245Right-handed 310
Helix 12
AB3
A
246 254Right-handed alpha
Helix 13
AB4
A
287 298Right-handed alpha
Helix 14
AB5
A
301 312Right-handed alpha
Helix 15
AB6
A
319 327Right-handed alpha
Helix 16
AB7
A
329 342Right-handed alpha
Helix 17
AB8
A
350 368Right-handed alpha
Helix 18
AB9
A
371 380Right-handed alpha
Helix 19
AC1
B
7 12Right-handed alpha
Helix 20
AC2
B
31 47Right-handed alpha
Helix 21
AC3
B
57 66Right-handed alpha
Helix 22
AC4
B
67 69Right-handed 310
Helix 23
AC5
B
81 88Right-handed alpha
Helix 24
AC6
B
97 103Right-handed alpha
Helix 25
AC7
B
105 111Right-handed alpha
Helix 26
AC8
B
143 145Right-handed 310
Helix 27
AC9
B
146 156Right-handed alpha
Helix 28
AD1
B
168 171Right-handed 310
Helix 29
AD2
B
172 179Right-handed alpha
Helix 30
AD3
B
200 216Right-handed alpha
Helix 31
AD4
B
224 234Right-handed alpha
Helix 32
AD5
B
243 245Right-handed 310
Helix 33
AD6
B
246 254Right-handed alpha
Helix 34
AD7
B
287 298Right-handed alpha
Helix 35
AD8
B
301 312Right-handed alpha
Helix 36
AD9
B
319 327Right-handed alpha
Helix 37
AE1
B
329 342Right-handed alpha
Helix 38
AE2
B
350 368Right-handed alpha
Helix 39
AE3
B
371 382Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 5B3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
22 25parallel
Strand 3
A
74 78parallel
Strand 4
A
273 281anti-parallel
Strand 5
A
121 126anti-parallel
Strand 6
A
316 317anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
22 25parallel
Strand 3
A
74 78parallel
Strand 4
A
273 281anti-parallel
Strand 5
A
343 344parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
237 242parallel
Strand 3
A
129 133anti-parallel
Strand 4
A
257 260anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 187first strand
Strand 2
A
190 197anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
21 25parallel
Strand 3
B
74 78parallel
Strand 4
B
273 281anti-parallel
Strand 5
B
121 126anti-parallel
Strand 6
B
316 317anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
21 25parallel
Strand 3
B
74 78parallel
Strand 4
B
273 281anti-parallel
Strand 5
B
343 344parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
237 242parallel
Strand 3
B
129 133anti-parallel
Strand 4
B
257 260anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 186first strand
Strand 2
B
191 197anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il