Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B3X entry

There is 1 chain in PDB entry 5B3X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4GLN 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5B3X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed 310
Helix 2
AA2
A
31 47Right-handed alpha
Helix 3
AA3
A
57 67Right-handed alpha
Helix 4
AA4
A
81 88Right-handed alpha
Helix 5
AA5
A
97 102Right-handed alpha
Helix 6
AA6
A
105 112Right-handed alpha
Helix 7
AA7
A
143 145Right-handed 310
Helix 8
AA8
A
146 156Right-handed alpha
Helix 9
AA9
A
172 178Right-handed alpha
Helix 10
AB1
A
200 216Right-handed alpha
Helix 11
AB2
A
224 234Right-handed alpha
Helix 12
AB3
A
243 245Right-handed 310
Helix 13
AB4
A
246 252Right-handed alpha
Helix 14
AB5
A
287 298Right-handed alpha
Helix 15
AB6
A
301 312Right-handed alpha
Helix 16
AB7
A
319 324Right-handed alpha
Helix 17
AB8
A
329 342Right-handed alpha
Helix 18
AB9
A
350 367Right-handed alpha
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There are 5 sheets in PDB entry 5B3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
21 25parallel
Strand 3
A
74 78parallel
Strand 4
A
273 282anti-parallel
Strand 5
A
121 126anti-parallel
Strand 6
A
316 317anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
273 282anti-parallel
Strand 3
A
343 344parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
117 118anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
237 242parallel
Strand 3
A
129 133anti-parallel
Strand 4
A
257 260anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
190 196anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il