Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B3Y entry

There is 1 chain in PDB entry 5B3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 8THR 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5B3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
39 55Right-handed alpha
Helix 3
AA3
A
65 75Right-handed alpha
Helix 4
AA4
A
89 96Right-handed alpha
Helix 5
AA5
A
105 110Right-handed alpha
Helix 6
AA6
A
113 120Right-handed alpha
Helix 7
AA7
A
151 153Right-handed 310
Helix 8
AA8
A
154 165Right-handed alpha
Helix 9
AA9
A
176 179Right-handed 310
Helix 10
AB1
A
180 187Right-handed alpha
Helix 11
AB2
A
208 224Right-handed alpha
Helix 12
AB3
A
232 242Right-handed alpha
Helix 13
AB4
A
251 253Right-handed 310
Helix 14
AB5
A
254 261Right-handed alpha
Helix 15
AB6
A
295 306Right-handed alpha
Helix 16
AB7
A
309 320Right-handed alpha
Helix 17
AB8
A
327 335Right-handed alpha
Helix 18
AB9
A
337 350Right-handed alpha
Helix 19
AC1
A
358 375Right-handed alpha
Helix 20
AC2
A
379 388Right-handed alpha
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There are 5 sheets in PDB entry 5B3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
29 33parallel
Strand 3
A
82 86parallel
Strand 4
A
281 289anti-parallel
Strand 5
A
129 134anti-parallel
Strand 6
A
324 325anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
29 33parallel
Strand 3
A
82 86parallel
Strand 4
A
281 289anti-parallel
Strand 5
A
351 352parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
125 126anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
245 250parallel
Strand 3
A
137 141anti-parallel
Strand 4
A
265 268anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
198 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il