Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B3Z entry

There are 4 chains in PDB entry 5B3Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 402
B	LYS 3	THR 402
C	GLU 2	THR 402
D	LYS 3	GLN 401

There are 73 helices in PDB entry 5B3Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	68	Right-handed alpha
Helix 2	AA2	A	78	88	Right-handed alpha
Helix 3	AA3	A	102	109	Right-handed alpha
Helix 4	AA4	A	118	123	Right-handed alpha
Helix 5	AA5	A	126	133	Right-handed alpha
Helix 6	AA6	A	164	166	Right-handed 310
Helix 7	AA7	A	167	177	Right-handed alpha
Helix 8	AA8	A	189	200	Right-handed alpha
Helix 9	AA9	A	221	237	Right-handed alpha
Helix 10	AB1	A	245	255	Right-handed alpha
Helix 11	AB2	A	264	266	Right-handed 310
Helix 12	AB3	A	267	275	Right-handed alpha
Helix 13	AB4	A	308	319	Right-handed alpha
Helix 14	AB5	A	322	333	Right-handed alpha
Helix 15	AB6	A	340	348	Right-handed alpha
Helix 16	AB7	A	350	363	Right-handed alpha
Helix 17	AB8	A	371	389	Right-handed alpha
Helix 18	AB9	A	392	401	Right-handed alpha
Helix 19	AC1	B	52	68	Right-handed alpha
Helix 20	AC2	B	78	88	Right-handed alpha
Helix 21	AC3	B	102	109	Right-handed alpha
Helix 22	AC4	B	118	124	Right-handed alpha
Helix 23	AC5	B	126	133	Right-handed alpha
Helix 24	AC6	B	164	166	Right-handed 310
Helix 25	AC7	B	167	177	Right-handed alpha
Helix 26	AC8	B	189	192	Right-handed 310
Helix 27	AC9	B	193	200	Right-handed alpha
Helix 28	AD1	B	221	237	Right-handed alpha
Helix 29	AD2	B	245	255	Right-handed alpha
Helix 30	AD3	B	264	266	Right-handed 310
Helix 31	AD4	B	267	275	Right-handed alpha
Helix 32	AD5	B	308	319	Right-handed alpha
Helix 33	AD6	B	322	333	Right-handed alpha
Helix 34	AD7	B	340	348	Right-handed alpha
Helix 35	AD8	B	350	362	Right-handed alpha
Helix 36	AD9	B	371	388	Right-handed alpha
Helix 37	AE1	B	392	401	Right-handed alpha
Helix 38	AE2	C	52	68	Right-handed alpha
Helix 39	AE3	C	78	88	Right-handed alpha
Helix 40	AE4	C	102	109	Right-handed alpha
Helix 41	AE5	C	118	123	Right-handed alpha
Helix 42	AE6	C	126	133	Right-handed alpha
Helix 43	AE7	C	167	177	Right-handed alpha
Helix 44	AE8	C	189	192	Right-handed 310
Helix 45	AE9	C	193	200	Right-handed alpha
Helix 46	AF1	C	221	237	Right-handed alpha
Helix 47	AF2	C	245	255	Right-handed alpha
Helix 48	AF3	C	264	266	Right-handed 310
Helix 49	AF4	C	267	273	Right-handed alpha
Helix 50	AF5	C	308	319	Right-handed alpha
Helix 51	AF6	C	322	331	Right-handed alpha
Helix 52	AF7	C	340	348	Right-handed alpha
Helix 53	AF8	C	350	362	Right-handed alpha
Helix 54	AF9	C	371	388	Right-handed alpha
Helix 55	AG1	C	392	402	Right-handed alpha
Helix 56	AG2	D	52	68	Right-handed alpha
Helix 57	AG3	D	78	88	Right-handed alpha
Helix 58	AG4	D	102	109	Right-handed alpha
Helix 59	AG5	D	118	125	Right-handed alpha
Helix 60	AG6	D	126	133	Right-handed alpha
Helix 61	AG7	D	164	166	Right-handed 310
Helix 62	AG8	D	167	177	Right-handed alpha
Helix 63	AG9	D	189	198	Right-handed alpha
Helix 64	AH1	D	221	237	Right-handed alpha
Helix 65	AH2	D	245	255	Right-handed alpha
Helix 66	AH3	D	264	266	Right-handed 310
Helix 67	AH4	D	267	273	Right-handed alpha
Helix 68	AH5	D	308	319	Right-handed alpha
Helix 69	AH6	D	322	333	Right-handed alpha
Helix 70	AH7	D	340	348	Right-handed alpha
Helix 71	AH8	D	350	363	Right-handed alpha
Helix 72	AH9	D	371	389	Right-handed alpha
Helix 73	AI1	D	392	401	Right-handed alpha

There are 25 sheets in PDB entry 5B3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	A	19	23	anti-parallel
Strand 3	A	29	30	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	42	46	parallel
Strand 3	A	95	99	parallel
Strand 4	A	294	302	anti-parallel
Strand 5	A	142	147	anti-parallel
Strand 6	A	337	338	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	42	46	parallel
Strand 3	A	95	99	parallel
Strand 4	A	294	302	anti-parallel
Strand 5	A	364	365	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	138	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	258	263	parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	278	281	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	211	212	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	29	30	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	74	first strand
Strand 2	B	43	46	parallel
Strand 3	B	95	99	parallel
Strand 4	B	294	302	anti-parallel
Strand 5	B	142	147	anti-parallel
Strand 6	B	337	338	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	74	first strand
Strand 2	B	43	46	parallel
Strand 3	B	95	99	parallel
Strand 4	B	294	302	anti-parallel
Strand 5	B	364	365	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	138	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	258	263	parallel
Strand 3	B	150	154	anti-parallel
Strand 4	B	278	281	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	208	first strand
Strand 2	B	211	218	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	286	first strand
Strand 2	B	289	290	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	C	19	23	anti-parallel
Strand 3	C	29	30	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	74	first strand
Strand 2	C	43	46	parallel
Strand 3	C	95	99	parallel
Strand 4	C	294	302	anti-parallel
Strand 5	C	142	147	anti-parallel
Strand 6	C	337	338	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	74	first strand
Strand 2	C	43	46	parallel
Strand 3	C	95	99	parallel
Strand 4	C	294	302	anti-parallel
Strand 5	C	364	365	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	135	first strand
Strand 2	C	138	139	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	258	263	parallel
Strand 3	C	150	154	anti-parallel
Strand 4	C	278	281	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	208	first strand
Strand 2	C	211	217	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	12	first strand
Strand 2	D	19	23	anti-parallel
Strand 3	D	29	30	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	74	first strand
Strand 2	D	43	46	parallel
Strand 3	D	95	99	parallel
Strand 4	D	294	302	anti-parallel
Strand 5	D	142	147	anti-parallel
Strand 6	D	337	338	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	74	first strand
Strand 2	D	43	46	parallel
Strand 3	D	95	99	parallel
Strand 4	D	294	302	anti-parallel
Strand 5	D	364	365	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	138	139	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	258	263	parallel
Strand 3	D	150	154	anti-parallel
Strand 4	D	278	281	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	286	first strand
Strand 2	D	289	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B3Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3Z