Analysis of interatomic Contacts of Structural Units in PDB entry:
5B43


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B43 entry

There is 1 chain in PDB entry 5B43 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 1289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 5B43. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
35 68Right-handed alpha
Helix 4
AA4
A
73 86Right-handed alpha
Helix 5
AA5
A
88 112Right-handed alpha
Helix 6
AA6
A
118 131Right-handed alpha
Helix 7
AA7
A
132 133Right-handed 310
Helix 8
AA8
A
134 138Right-handed 310
Helix 9
AA9
A
140 146Right-handed alpha
Helix 10
AB1
A
152 160Right-handed alpha
Helix 11
AB2
A
161 163Right-handed 310
Helix 12
AB3
A
165 168Right-handed 310
Helix 13
AB4
A
169 181Right-handed alpha
Helix 14
AB5
A
188 196Right-handed alpha
Helix 15
AB6
A
196 215Right-handed alpha
Helix 16
AB7
A
216 230Right-handed alpha
Helix 17
AB8
A
242 249Right-handed 310
Helix 18
AB9
A
251 264Right-handed alpha
Helix 19
AC1
A
276 287Right-handed alpha
Helix 20
AC2
A
289 298Right-handed alpha
Helix 21
AC3
A
325 344Right-handed alpha
Helix 22
AC4
A
344 356Right-handed alpha
Helix 23
AC5
A
360 363Right-handed 310
Helix 24
AC6
A
367 379Right-handed alpha
Helix 25
AC7
A
382 395Right-handed alpha
Helix 26
AC8
A
402 415Right-handed alpha
Helix 27
AC9
A
420 428Right-handed alpha
Helix 28
AD1
A
428 451Right-handed alpha
Helix 29
AD2
A
460 482Right-handed alpha
Helix 30
AD3
A
493 507Right-handed alpha
Helix 31
AD4
A
508 522Right-handed alpha
Helix 32
AD5
A
545 547Right-handed 310
Helix 33
AD6
A
548 553Right-handed alpha
Helix 34
AD7
A
600 609Right-handed alpha
Helix 35
AD8
A
612 622Right-handed alpha
Helix 36
AD9
A
639 647Right-handed alpha
Helix 37
AE1
A
656 663Right-handed alpha
Helix 38
AE2
A
665 687Right-handed alpha
Helix 39
AE3
A
700 704Right-handed 310
Helix 40
AE4
A
706 715Right-handed alpha
Helix 41
AE5
A
727 737Right-handed alpha
Helix 42
AE6
A
747 751Right-handed 310
Helix 43
AE7
A
759 769Right-handed alpha
Helix 44
AE8
A
770 776Right-handed alpha
Helix 45
AE9
A
819 831Right-handed alpha
Helix 46
AF1
A
839 845Right-handed alpha
Helix 47
AF2
A
862 866Right-handed 310
Helix 48
AF3
A
887 899Right-handed alpha
Helix 49
AF4
A
940 957Right-handed alpha
Helix 50
AF5
A
964 987Right-handed alpha
Helix 51
AF6
A
1011 1025Right-handed alpha
Helix 52
AF7
A
1090 1100Right-handed alpha
Helix 53
AF8
A
1122 1126Right-handed 310
Helix 54
AF9
A
1177 1190Right-handed alpha
Helix 55
AG1
A
1199 1207Right-handed alpha
Helix 56
AG2
A
1208 1223Right-handed alpha
Helix 57
AG3
A
1250 1254Right-handed 310
Helix 58
AG4
A
1261 1284Right-handed alpha
Helix 59
AG5
A
1294 1307Right-handed alpha
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There are 11 sheets in PDB entry 5B43. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
562 567anti-parallel
Strand 7
A
554 559anti-parallel
Strand 8
A
591 597anti-parallel
Strand 9
A
719 725anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
780 781anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
418 419anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
636 638anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 807first strand
Strand 2
A
851 853anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 931first strand
Strand 2
A
916 920anti-parallel
Strand 3
A
904 908anti-parallel
Strand 4
A
989 993parallel
Strand 5
A
1062 1065parallel
Strand 6
A
1058 1059anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
934 935first strand
Strand 2
A
938 939anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1101 1106first strand
Strand 2
A
1113 1118anti-parallel
Strand 3
A
1135 1140anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1147first strand
Strand 2
A
1153 1155anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1161first strand
Strand 2
A
1174 1176anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1229first strand
Strand 2
A
1234 1237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il