Analysis of interatomic Contacts of Structural Units in PDB entry:
5B46


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B46 entry

There are 2 chains in PDB entry 5B46 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 628
B
 ARG 4ILE 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5B46. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
74 82Right-handed alpha
Helix 3
AA3
A
94 96Right-handed 310
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
107 120Right-handed alpha
Helix 6
AA6
A
126 136Right-handed alpha
Helix 7
AA7
A
145 158Right-handed alpha
Helix 8
AA8
A
160 165Right-handed alpha
Helix 9
AA9
A
166 181Right-handed alpha
Helix 10
AB1
A
183 193Right-handed alpha
Helix 11
AB2
A
197 214Right-handed alpha
Helix 12
AB3
A
235 246Right-handed alpha
Helix 13
AB4
A
259 269Right-handed alpha
Helix 14
AB5
A
293 306Right-handed alpha
Helix 15
AB6
A
316 333Right-handed alpha
Helix 16
AB7
A
359 365Right-handed alpha
Helix 17
AB8
A
380 399Right-handed alpha
Helix 18
AB9
A
407 413Right-handed alpha
Helix 19
AC1
A
420 423Right-handed 310
Helix 20
AC2
A
479 501Right-handed alpha
Helix 21
AC3
A
502 505Right-handed 310
Helix 22
AC4
A
523 536Right-handed alpha
Helix 23
AC5
A
553 562Right-handed alpha
Helix 24
AC6
A
576 587Right-handed alpha
Helix 25
AC7
A
603 618Right-handed alpha
Helix 26
AC8
B
16 31Right-handed alpha
Helix 27
AC9
B
34 36Right-handed 310
Helix 28
AD1
B
46 54Right-handed 310
Helix 29
AD2
B
67 79Right-handed alpha
Helix 30
AD3
B
90 95Right-handed alpha
Helix 31
AD4
B
97 108Right-handed alpha
Helix 32
AD5
B
151 160Right-handed alpha
Helix 33
AD6
B
171 185Right-handed alpha
Helix 34
AD7
B
205 211Right-handed alpha
Helix 35
AD8
B
217 219Right-handed 310
Helix 36
AD9
B
228 230Right-handed 310
Helix 37
AE1
B
231 244Right-handed alpha
Helix 38
AE2
B
263 272Right-handed alpha
Helix 39
AE3
B
279 283Right-handed 310
Helix 40
AE4
B
295 301Right-handed alpha
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There are 9 sheets in PDB entry 5B46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
85 92parallel
Strand 3
A
67 71parallel
Strand 4
A
4 11parallel
Strand 5
A
48 56anti-parallel
Strand 6
A
33 36anti-parallel
Strand 7
A
414 418anti-parallel
Strand 8
A
230 234anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
248 253parallel
Strand 3
A
310 315parallel
Strand 4
A
337 341parallel
Strand 5
A
401 405parallel
Strand 6
A
374 377parallel
Strand 7
A
548 550anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 276first strand
Strand 2
A
280 285anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
351 355anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 510first strand
Strand 2
A
541 546anti-parallel
Strand 3
A
515 520parallel
Strand 4
A
566 571parallel
Strand 5
A
592 596parallel
Strand 6
A
621 624parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
38 42parallel
Strand 3
B
83 89parallel
Strand 4
B
112 117parallel
Strand 5
B
189 194parallel
Strand 6
B
163 168parallel
Strand 7
B
250 258anti-parallel
Strand 8
B
213 215parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
38 42parallel
Strand 3
B
83 89parallel
Strand 4
B
112 117parallel
Strand 5
B
189 194parallel
Strand 6
B
163 168parallel
Strand 7
B
250 258anti-parallel
Strand 8
B
225 226parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 121first strand
Strand 2
B
127 128anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 287first strand
Strand 2
B
290 291anti-parallel
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