Analysis of interatomic Contacts of Structural Units in PDB entry:
5B47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B47 entry

There are 2 chains in PDB entry 5B47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 628
B
 PHE 8ILE 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 5B47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
74 82Right-handed alpha
Helix 3
AA3
A
94 96Right-handed 310
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
107 120Right-handed alpha
Helix 6
AA6
A
126 136Right-handed alpha
Helix 7
AA7
A
145 157Right-handed alpha
Helix 8
AA8
A
160 165Right-handed alpha
Helix 9
AA9
A
167 181Right-handed alpha
Helix 10
AB1
A
183 195Right-handed alpha
Helix 11
AB2
A
197 214Right-handed alpha
Helix 12
AB3
A
235 246Right-handed alpha
Helix 13
AB4
A
256 269Right-handed alpha
Helix 14
AB5
A
277 279Right-handed 310
Helix 15
AB6
A
293 307Right-handed alpha
Helix 16
AB7
A
316 333Right-handed alpha
Helix 17
AB8
A
359 365Right-handed alpha
Helix 18
AB9
A
380 399Right-handed alpha
Helix 19
AC1
A
408 413Right-handed alpha
Helix 20
AC2
A
420 423Right-handed 310
Helix 21
AC3
A
479 501Right-handed alpha
Helix 22
AC4
A
502 505Right-handed 310
Helix 23
AC5
A
523 536Right-handed alpha
Helix 24
AC6
A
553 562Right-handed alpha
Helix 25
AC7
A
576 587Right-handed alpha
Helix 26
AC8
A
603 618Right-handed alpha
Helix 27
AC9
B
16 31Right-handed alpha
Helix 28
AD1
B
34 36Right-handed 310
Helix 29
AD2
B
46 54Right-handed 310
Helix 30
AD3
B
67 79Right-handed alpha
Helix 31
AD4
B
97 108Right-handed alpha
Helix 32
AD5
B
151 160Right-handed alpha
Helix 33
AD6
B
171 185Right-handed alpha
Helix 34
AD7
B
217 219Right-handed 310
Helix 35
AD8
B
228 230Right-handed 310
Helix 36
AD9
B
231 243Right-handed alpha
Helix 37
AE1
B
263 272Right-handed alpha
Helix 38
AE2
B
279 283Right-handed 310
Helix 39
AE3
B
295 301Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5B47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
85 92parallel
Strand 3
A
67 71parallel
Strand 4
A
4 11parallel
Strand 5
A
48 56anti-parallel
Strand 6
A
33 39anti-parallel
Strand 7
A
414 418anti-parallel
Strand 8
A
230 234anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
248 253parallel
Strand 3
A
310 315parallel
Strand 4
A
337 345parallel
Strand 5
A
351 355anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
248 253parallel
Strand 3
A
310 315parallel
Strand 4
A
337 345parallel
Strand 5
A
401 407parallel
Strand 6
A
374 377parallel
Strand 7
A
548 550anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 276first strand
Strand 2
A
280 285anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 510first strand
Strand 2
A
542 546anti-parallel
Strand 3
A
515 520parallel
Strand 4
A
566 571parallel
Strand 5
A
592 596parallel
Strand 6
A
621 624parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
38 42parallel
Strand 3
B
83 89parallel
Strand 4
B
111 117parallel
Strand 5
B
188 194parallel
Strand 6
B
163 168parallel
Strand 7
B
250 258anti-parallel
Strand 8
B
213 215parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
38 42parallel
Strand 3
B
83 89parallel
Strand 4
B
111 117parallel
Strand 5
B
188 194parallel
Strand 6
B
163 168parallel
Strand 7
B
250 258anti-parallel
Strand 8
B
225 226parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 287first strand
Strand 2
B
290 291anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il